Gene detail

Gene detail information of Glyur000209s00013465

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25620.2	0	ABC-2 type transporter family protein
NR	XP_004496215.1	0	PREDICTED: ABC transporter G family member 21-like [Cicer arietinum]
COG	YP_001302825.1	5.00E-38	multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503]
Swissprot	tr\|Q7XA72\|AB21G_ARATH	0	ABC transporter G family member 21
trEMBL	tr\|I1LCU7\|I1LCU7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G34980.1}

Sequence

Transcript Sequence

>Glyur000209s00013465.1
CGCATAAGCCAATGATAACACCATTCAAGATCAAGCAAAAACAGTACTAGTGACACAGCAAAACGAAAACAGTAGCAGCTAGCGCACCTCTCTCCCTAAGACTATATATTGTTATCATTTCAATCACTTCTTCGTGTGCATCTCGTTCTCTCATATGTGACACTCCCTTCTTAATTGACATTCCCTCCTCCCTTCTCCCTCATTCAATTTTGGGCCTCTCCATCTTGCTCCGATCCCTTAATCATATCATATATTATACACTCATCCATCATCTATATATATCTAGCTTATATCTCATTAATAAAATTATTCCCCTTTTTAATTTGGTAATATCTATATTCTGATCAGATGATGCCCCCTGAGCAAGAAACCACTATTGCACCACCAGCCATCACAAACCGACCCGATCATGAGAACAGCTCCGAACACGCAGAGGGTGGTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCCACTAACAAAGTCAAACCCAGCTTCGATGACAACGCCATTCCCTCTCAGCAACAACACCACCCCCCCACACCATCATCATCATTTCCCAATATTCTTCACCAATCCCTCCGTCCCGTTACCCTCAAATTTGAAGATGTGTCGTATAGCGTGACCTTAACGAACCAAAAGAGAAACGGTTGTGGTGGATTGGGGAGAGAGACAAAGGTAACCAGGAAAGTGCTGAGTGGCGTGACGGGGATAGCGAGTCCCGGCGAGTTGACGGCAATGCTGGGTCCCTCGGGGAGNGGCAAGACCACCCTGCTCACCGCACTGGCCGGAAGGCTGGCCGGAAAACTCTCCGGCAGCATAACCTACAACGGAAACCCAGACTTCCGGTGCATGAAGAGGAGGATAGGGTTCGTGTCGCAAGACGACGTCGTTTACCCGCACCTCACGGTGCTCGAGACGCTCACCTACGCGGCACTGCTGAGGCTGCCCAATACCCTCACACGGGAAGAGAAGGTGGGTCACGCGGAGAGGGTGATATCGGAGCTTGGACTCACGCGGTGTCGGAACAGCCCCGTCGGCGGGAGAATGGGAAGGTTCAGGGGAATCTCCGGCGGGGAGAGGAAGCGGGTGAGTATCGGGCACGAGATGTTGGTGAACCCGAGTCTGTTGCTGCTGGATGAACCGACTTCTGGTCTGGATTCAACGACGGCTCAGATGATCGTGTCGGTTCTCAGGGGACTCGCCCGGTCCGGTCGGACCGTGTTGACCACGATCCATCAGCCTTCGAGCCGGTTGTACAGGATGTTTGATAAGGTGGTGGTGTTGTCTGATGGGCACCCCATCTATAGTGGCCAATCGGGTCGGGNCATGGACTATCTTGAATCCGTTGGGTATGTGCCCGCTTTCAACTTCGTCAACCCCGCTGATTTCCTCCTTGACCTTGCTAATGGCATAGTTGCTGATGTCAAACATGATGATCAGATAGAGCACCATGAGGATCAAGCCTCAGTCAAACAGTCCCTAGTTTCATCCTATAAGAAAAACTTATATCCTGCTCTTAAAGAAGAGATTCAGCAAAGTAACAGTGAACCAGTGGTTTTTACATCAAGAACACCTAGACGTTCTGATAACCAATGGAACACTAGCTGGTGGGTGCAATTCAAGGTGCTGCTTAAGAGGGGTCTACAGGAGAGGAGGCATGAATCTTTTTCTGGCTTAAGGATTTTCCAAGTTCTGTNTGTATCCGTTCTCTCAGGACTCCTGTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGACTCCTATTCTTCTTCTCAATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGATAACAAAAGAAAGATCATCAGGCATGTACCATCTCTCCTCCTACTATGTTGCTCGGATGGTGGGNGACTTACCAATGGAGCTTGTGCTTCCTACTATTTTTGTAACCATCGCCTACTGGATGGGTGGTCTCAAGCCTTCCCTGGTTACATTTGTGTTAACCCTTTTGATCATGCTTTTTAATGTCCTAGTCTCTCAAGGAATAGGCCTAGCACTTGGGGCCATTCTCATGGATGTGAAGCAGGCCACAACTCTGGCTTCAGTGACAATGCTAGTGTTTCTGTTAGCTGGTGGTTACTACATTCAGCAAATGCCTTCTTTTATAGCCTGGTTAAAGTACATATCTTTCAGCCACTACTGCTATAAGCTGCTGGTAGGGGTCCAGTATTCAGTGAATGAGGTCTACGAGTGTGGACCAGGGTTGCATTGTAGGGTAAGAGATTTTCCAGCCATAAAGTGTTTGGGGCTTGATAATATGTGGGGAGATGTGGCTGCATTGACCATGATGTTGATTGGATACAGAGTTGTGGCATATCTGGCTTTGAGGATGGGGCAGCTTCGCTGACTAAATACTTGCTANATTTTAGAGACCATATTATTAATTTTCGAGTTTGGTTGTTTCAATGACCGCCTAAGTTAAATTGGTGATTCGATTCAAATTATAAGGAGAATATCTTTAATCCCTGTGATTAATTGACCTGAAATGAAACAATCAAAATTTGTAGAAATATAGTCCAAATTTTTTATGGAGGAAAACCAGCTGTANCAGTTAGACGCGTCATCAGTCATCTAGTTTTTTAGTTATCAGGAGTACAATGTTCTACTACTGCCATCAACAGATGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	118644	123434	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013465.1	PF00005.22	ABC_tran	118	267	1.50E-23
Glyur000209s00013465.1	PF01061.19	ABC2_membrane	423	628	1.40E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.591
SRR1783600	control	2.585
SRR1783602	moderate drought stress	3.063
SRR1811619	moderate drought stress	3.095

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.612
DRR006520	Root Summer glycyrrhizin high producing strain	9.230
DRR006521	Root Winter glycyrrhizin high producing strain	0.829
DRR006522	Root Winter glycyrrhizin high producing strain	0.809
DRR006523	Root Summer glycyrrhizin low producing strain	9.681
DRR006524	Root Summer glycyrrhizin low producing strain	9.474
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.305
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.458

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.355
SRR2868004	Drought Stress (root)	6.387
SRR2967015	Control (root)	9.415

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.080
SRR9715740	Leaf	5.513
SRR9715741	Leaf	6.423
SRR9715739	Root	6.261
SRR9715742	Root	23.667
SRR9715743	Root	20.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.251
SRR8749028	MeJA induced 9h	0.510
SRR8749029	MeJA induced 9h	0.068
SRR8749030	Uninduced	0.400
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.137

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.725
SRR8400027	Control - Root	7.566