Gene detail

Gene detail information of Glyur000209s00013455.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22360.1	1.00E-53	SWIB complex BAF60b domain-containing protein
NR	XP_007154015.1	1.74E-149	hypothetical protein PHAVU_003G083900g [Phaseolus vulgaris]
COG	YP_002496615.1	3.00E-17	SWIB/MDM2 domain-containing protein [Methylobacterium nodulans ORS 2060]
trEMBL	tr\|V7C786\|V7C786_PHAVU	6.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:ESW26009.1}

Sequence

Transcript Sequence

>Glyur000209s00013455.1
TCCATTTCCATGGTGGAAGTGAAAATTGAAAAAAGGTGCCTAGCCACTGCAGCTTTTCCCCTTTTTACGTTTCTACCCCTCCAACTACTACTCTCTCTTATCCATCGCGTAAAATTACGATTCTACTCCTATCTATCTATCTATCTATCTTATCTACACACTACTTACTACTACACAGCAGTGGGGGTAACAAGCTCGTGATACAGTCGTCATTTCGTTGCAAACCTTTTACAAATCCGAATAAAGGGCATTTTTGTGATTTCAGTATTATAAAGAGAGAGAGAGAGACGGAGAGGGAGAGGGAGAGGGAGGGAGAGAGAGAGAGAGAGAGTGAAGAAGATAGAGAGATAGAGAGAGAGAGGGTAGTAGTCGTTTGAGTCCGTTTTTTCTGTTGGTAATATATGAAGAGGGTGACTGGTGAAGAAACAATGGTGTCGGACGAGGATATAGCAAAAGGGGTGGAGTCTCTGCTCCGTCACTCCGACCCAAACTCCATAACAACGGTAAACGGTGTCGTTCAGCAGCTTGAGGCCAAGCTAGGGTTAGACCTCTCCCACAAGGCCGGTTTCATCAGAGACCAGATCGACCTTCTTCTCCGCCCACACCCACACCCACCAGGGCCACCACACCCACACCCTTTTCTTCCTCATCCTGCTCCATCCTCTAAAGACCATTATGCCCCTGACCCCCACCATTACCCCCAACCACACTTCCCACCCACCCACTTTCCTTCCCATTTTGCCCCCCACCCTCATCCTCGNCCCCATCACGAGATCAACTTCCACCAGCCACACCCTCCTCCACCGGCGAGTAAAGCTCACGCCTTTCCTCAAAATGCCGATGCTCTTCCCTCTCCTCAAGCACCCAAACAAAGTGTTGCAACTGGAGGCAAAAAAAGAGGTGGTGCNGGTGGTCTGAACAAAGTTTGTGGTGTTTCTCCTGAACTTCAGGCAGTTGTTGGTGAGTCGGCACTGCCAAGAACTGAGATTGTGAGGCAGCTATGGGCATACATNAGGAAAAACAACCTCCAAGATCCTGGTAACAAAAGAAAGATAATTTGCGATGATGCTNTGCGTTTGGTATTTGAGACAGACTGCACTGACATGTTCAAGATGAATAAGTTGCTATCTAAACACATCATCCCACTTGGACCTACAAAGGAGCCACAAGCTAAACGAATGAAGGTGGAAGCTGAATCTACAATTGAAATGGCTGAACCTGCTTCATCTACTGTGATAATATCTGAAGCGCTTGCCAAATTTTTGGGCACTGGTGGAAGGGAGATGCAACAATCTGAAGCCATAAGACTTGTTTGGGAGTACATCAAGCTTAATCATTTGGAGGTATGTAGCCATGTCCACTACTTTCTCCACTACGCACACCCACATATTCAAACATGCTTCACCCTTCATTGGGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	42047	44538	+

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013455.1	PF08766.6	DEK_C	12	65	2.80E-15
Glyur000209s00013455.1	PF02201.13	SWIB	173	247	1.90E-25
Glyur000209s00013455.1	PF02201.13	SWIB	277	313	1.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.007
SRR1783600	control	10.014
SRR1783602	moderate drought stress	15.442
SRR1811619	moderate drought stress	15.220

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.722
DRR006520	Root Summer glycyrrhizin high producing strain	9.103
DRR006521	Root Winter glycyrrhizin high producing strain	6.257
DRR006522	Root Winter glycyrrhizin high producing strain	6.468
DRR006523	Root Summer glycyrrhizin low producing strain	9.435
DRR006524	Root Summer glycyrrhizin low producing strain	8.933
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.781

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.278
SRR2868004	Drought Stress (root)	24.471
SRR2967015	Control (root)	29.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.297
SRR9715740	Leaf	9.894
SRR9715741	Leaf	8.152
SRR9715739	Root	8.069
SRR9715742	Root	10.371
SRR9715743	Root	8.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.667
SRR8749028	MeJA induced 9h	19.466
SRR8749029	MeJA induced 9h	16.789
SRR8749030	Uninduced	10.800
SRR8749031	Uninduced	7.802
SRR8749032	Uninduced	8.184

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.654
SRR8400027	Control - Root	25.420