Gene detail information of Glyur000209s00013449 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14590.1 | 1.00E-149 | embryo defective 2739 |
| NR | XP_004507646.1 | 0 | PREDICTED: integrator complex subunit 3-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072UU83|A0A072UU83_MEDTR | 0 | Integrator complex subunit 3 {ECO:0000313|EMBL:KEH32653.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 17348 | 18769 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000209s00013449.1 | PF10189.4 | DUF2356 | 233 | 453 | 2.70E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.882 |
| SRR1783600 | control | 3.772 |
| SRR1783602 | moderate drought stress | 2.779 |
| SRR1811619 | moderate drought stress | 2.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.575 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.372 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.932 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.559 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.753 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.836 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.608 |
| SRR2868004 | Drought Stress (root) | 5.372 |
| SRR2967015 | Control (root) | 5.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.541 |
| SRR9715740 | Leaf | 11.877 |
| SRR9715741 | Leaf | 12.050 |
| SRR9715739 | Root | 14.618 |
| SRR9715742 | Root | 14.944 |
| SRR9715743 | Root | 14.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.747 |
| SRR8749028 | MeJA induced 9h | 18.227 |
| SRR8749029 | MeJA induced 9h | 20.602 |
| SRR8749030 | Uninduced | 21.195 |
| SRR8749031 | Uninduced | 16.026 |
| SRR8749032 | Uninduced | 23.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.214 |
| SRR8400027 | Control - Root | 3.822 |