Gene detail

Gene detail information of Glyur000209s00013448

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01435.1	1.00E-36	Expressed protein
NR	NP_001236135.1	3.04E-63	uncharacterized protein LOC100306257 [Glycine max]
Swissprot	tr\|Q6ID77\|MED11_ARATH	8.00E-46	Mediator of RNA polymerase II transcription subunit 11
trEMBL	tr\|C6SYN4\|C6SYN4_SOYBN	1.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35290.1}

Sequence

Transcript Sequence

>Glyur000209s00013448.1
CCCTGTTACCCTGATAATTAATGATGTAGATCTTTCGATTGAGAATTAACACATAGCATATGAAACTGATAATCATACTTGAAATTGCATCTAGTTGTTTCATTCGCAAACTCCCAACTAAACAGATAATTCTTAATAAAGGAGCAAGGGGGAATGTAGAAAAAACAGATTGCTATTTATCTACACTTTCTAATGGAAAAAAAATATATATGTAATTTCATAATNTGCAATTGAATTCATAAGAATGGGGACTTAATTTATGTGCACTACTTGCTACATACTCCTATAGTATTCTTAGTACCTTGGTTTAAATTAAAGACAAATTTGAGGNACTCAAAGGTGGCCATGATGGACTAGCAACTACCTTGCAGAAATCCGTTAGAACTTCCAAGCTTTACACCCGATAATAACCTGCCCAATCCCTCTTTTAGAGAAGGGGACAATGCAGGACAAGAAGTCAAAACATCAAGAGACTGAATCACACCTCTGCTGACAAGTAACTGAAAAGCTGATGAGACACCTTTAACTATGATACCCTTGTGTTCCACATCATAGTTGTCCACGAGAAGTAACAAAAACTCAAGAAGAGCGTCGGTCATGTGAGCATATTTTGGAACAGAATGCACCATCAACAANATCGCAGGCTCAATGTTCATGATATTGTCCACCCTTTCATCAAAGAAGAGCCAGTCATAAAACAAGGCCAGTTTCACATTNGCCTCCACATAATTCTTTCTACAACACTTCAAAAGCCAACCAATAACAGCCCATCTAGGAATCACATCAGACTGAATAATCTCATTTGGTGGGTGGTGTGCACAACATATAAACCTAACTATATCAACTATGGCAGTCTCTTTATCAGGCTCACCAAGGAACTTCCTAGCAAACCACATCTGGTGCCTCTTTTGATGCCCGAACTTCACATGTGTAAGCAAAAACCTCAATTGGGTCTCCATTTCAGGAGTGATCCTAAGCAAAGCATACCTACTAGAAGTCCTGGTGCAGTAAATCTGAGAAACACCCACAAATCCTAAAGTATTAAACCGAGATGGATTCAACACCAGGTCCTTCCATATGGCCTTAAATTCAGGAACATGAACCAAATCCTGCAACAACCGAATAAAATCCCTCCCAATTTTTAAACACAGATGAAACTCTTCCCTCACTATCTTCACACACAAATGAATCTCCAACCGACTCAAAGACTCCAACTTTTCACCACTGATTCTACAGTGATCAGCCAAAACTCGAAGAAACACGTATAATGCACTGCACAAAACATGGGGTGCTTCATCCAAGAGGCACTGCCATTTATCTAAGAAGAGGGTCACCAATTTCATACACAGCCACAAATTGCCGTCGCTGAAATCGCCGCCAACGATTTGCCGTAAAAGGGAGACCAGGAGAGCGTCGTAGCCAATCGCCGACACCCGAACCATTTCATCGGTGACCCAGAGCAACTGGTTTTTCACCGAACCGAGGAGCTTCGGGTAGAGGTGGTGAACGGTTTTGAGGAGCAAGTCGAGGAAGATGGCGTAACCGTCGGTGACGAGGGCGTGCAAGTGCTTGACGTGGGTTTTGGCGAGATGGGGTTCGCACAAAACGCCATGGAGGATTGCGCGGTTGAGCAGAGCGTATTCATCGGGTTTTGGAATGGTTAAGGAGAAAGGGGGTCTCAGGGTTGGTTCCAGAGATTCAAAGGCTTGTCTCAGAGAGACTTCGATTTGGTTTTCGGCTTCGTGTGGTGCCGCCGCGGTGAGCTCCAAAACCATGAAGAGAGAGAGGCGATTACGGGGAAGTGAAACGCTGGATTGATGGGGAAGACGCGGGTTTGACCCAAATTTATTCGTTTGACCCAGCTGGGGCCAATTGGTAATTGAACATTCAGAGTAATGCACAAAAGGTCGATATCACATTGCCTTCTCTTCGCATATCTTCGCCGTCGCTCACTCGCTCGCCTCCACACTCGGCCGATTTCCACTTCAGTTTCGACTTGGATTAGAAACACAAGGAGGAAGCAGCATCCATGGATTCACAGGGCCAGACAACTTCTTTGCAACGACTTCAGAATGTGGAAAAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAAGATGTGGTCCAAAATCACTGCCTTGAATTCATGCAATTAATCAAGGACATCCAGGTGGCATTGCGTGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGATTATGGTTCAAGAATAGCCAATGAGATATGTTACAAGAAAGTGGATTTTGTCATGTCACAGTTGGATGCAATGGAAAAAACCATAGATGAGTATCATGCAGCAGTCTGAAATTTTTGCAGCTTTAGTTCCCTATAGAAGCCTGGGTTACCTCCTGGTTTGAAATTCNGTGATGTGTGGTTGCTTGATGCTAGACGAGTTGGGGTGTTGTTTTTGGATAGGGTAAGATATCAACATAATGGAGATTCATTTCTCCACTCCCCCCCCCTCCCCTTTTTTTTTACATTTTTTTATTTTATTTAGAGGGGCTATTTGAACGATATGTATGTAGTGTCTACCATATATATACACACTGATCATGTAAGAATGATTATGAGGTTCTGGATTCAATTTTCAATGATTAGTTGTAGTAACCAGCAACAACAAATATTGGCACTGATTGTTGATTCTTTAGTACCAAATCTTCGGGCTGTTTAATCAGAAGGCACACAAAATTTGTATTTTCACTCCAATTTCTAATTGCACCTGGACTGGCTCAAAGCATTACCTACCCACCTTTTCTACCCAACTTCTTGTTGGTTAATTAGCAGTTATATTTAATGACCTGTATTGTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	14572	19122	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006357 regulation of transcription from RNA polymerase II promoter

cellular_component
GO:0016592 mediator complex

molecular_function
GO:0001104 RNA polymerase II transcription cofactor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013448.1	PF10280.4	Med11	62	156	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.882
SRR1783600	control	8.865
SRR1783602	moderate drought stress	7.655
SRR1811619	moderate drought stress	7.645

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.512
DRR006520	Root Summer glycyrrhizin high producing strain	11.345
DRR006521	Root Winter glycyrrhizin high producing strain	8.089
DRR006522	Root Winter glycyrrhizin high producing strain	8.014
DRR006523	Root Summer glycyrrhizin low producing strain	13.759
DRR006524	Root Summer glycyrrhizin low producing strain	13.790
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.352

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.875
SRR2868004	Drought Stress (root)	11.235
SRR2967015	Control (root)	9.901

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.913
SRR9715740	Leaf	14.133
SRR9715741	Leaf	22.502
SRR9715739	Root	13.692
SRR9715742	Root	19.967
SRR9715743	Root	18.386

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.803
SRR8749028	MeJA induced 9h	28.025
SRR8749029	MeJA induced 9h	44.164
SRR8749030	Uninduced	43.260
SRR8749031	Uninduced	22.127
SRR8749032	Uninduced	34.578

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.373
SRR8400027	Control - Root	13.076