Gene detail information of Glyur000209s00013447 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22300.1 | 2.00E-48 | carboxylesterases |
| NR | XP_002317196.1 | 7.94E-66 | phospholipase/carboxylesterase family protein [Populus trichocarpa] |
| COG | YP_154430.1 | 9.00E-20 | phospholipase/carboxylesterase [Idiomarina loihiensis L2TR] |
| trEMBL | tr|B9HZJ0|B9HZJ0_POPTR | 3.00E-66 | Phospholipase/carboxylesterase family protein {ECO:0000313|EMBL:EEE97808.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 11904 | 14260 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000209s00013447.1 | PF02230.11 | Abhydrolase_2 | 55 | 163 | 1.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.535 |
| SRR1783600 | control | 26.707 |
| SRR1783602 | moderate drought stress | 36.222 |
| SRR1811619 | moderate drought stress | 36.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.235 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.284 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.683 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.236 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.222 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 39.506 |
| SRR2868004 | Drought Stress (root) | 39.053 |
| SRR2967015 | Control (root) | 37.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.370 |
| SRR9715740 | Leaf | 27.351 |
| SRR9715741 | Leaf | 26.998 |
| SRR9715739 | Root | 31.252 |
| SRR9715742 | Root | 22.342 |
| SRR9715743 | Root | 20.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.961 |
| SRR8749028 | MeJA induced 9h | 8.134 |
| SRR8749029 | MeJA induced 9h | 12.488 |
| SRR8749030 | Uninduced | 3.463 |
| SRR8749031 | Uninduced | 3.452 |
| SRR8749032 | Uninduced | 3.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 56.816 |
| SRR8400027 | Control - Root | 52.674 |