Gene detail

Gene detail information of Glyur000209s00013444.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05530.1	2.00E-91	indole-3-butyric acid response 1
NR	AFK45209.1	5.43E-162	unknown [Lotus japonicus]
COG	YP_007225595.1	1.00E-52	dehydrogenase [Echinicola vietnamensis DSM 17526]
Swissprot	tr\|H9BFQ2\|TPRL3_ERYCB	2.00E-145	Tropinone reductase-like 3
trEMBL	tr\|I3SY67\|I3SY67_LOTJA	2.00E-162	Uncharacterized protein {ECO:0000313\|EMBL:AFK45209.1}

Sequence

Transcript Sequence

>Glyur000209s00013444.1
ATAGATCATCCCTTGGAAGAAAGCAAGCACCTAGTTTTATCAAAAAAAGAAAGCAAGTTTTTATCAAAAAAAAAGAGAAAAGAAAGCAAGCACCTAGGAGTCTGCTTCCTTGTTCTCAGTTCCAGAGACAACCTTACCTAGGCGTCTGTGTTGGATTGATTGATTACAAAGTGGAAATGGAAATACCAAAGAGATTCAAAGGCAAGGTGGCCATCGTGACGGCTTCCACTCAGGGAATTGGCTTTGGCATAGCCGAGAGGCTTGGCTTGGAAGGTGCCTCTGTTGTCATCTCTTCTCGCAGACAACAAAATGTTGATGCGGCTGCGGAACAACTAAGGGCCAAAGGAATCGAGGTGTTGGCGATTGTTTGCCATGTCTCAAATGCTCAACAAAGGAAGAATTTGATAGACAAAACTGTGCAGAGGTATGGAAAGATAGATGTTGTTGTGTCCAATGCTGCTGCAAATCCTTCTGTTGATTCCATTCTGCAAACACAAGACTCGGTCCTTGACAAGATATGGGAGATAAATGTCAAAGCCTCTATACTTCTTCTGAAGGATGCAGCTCCTCACTTGCAGAAGGGTTCTTCCGTTGTTATCATTTCCTCAATTGCTGCTTATAACCCACCTGCTTCGATGGCTATGTATGGGGTGACCAAAACAGCCCTTCTTGGACTTACCAAAGTTGGTGCTTGGCTTCCAATTGCCCTGGCTTCTGAGATGGGCCCAAACACTCGTGTAAACTGTGTTGCTCCTGGTTTTGTACCAACTCACTTTGCTTCATTCATTACCAGTAATGAGGCTTTGAGGCAGGAGCTTGAAGGGAAGACATTTCTTGGAAGGCTTGGTACAACTGAAGACATGGCTGCTGCTACAGCTTTTTTGGCATCTGATGATTCTTCTTATATAACAGGAGAAACTATAGCAGTTGCTGGGGGAACACCATCGAGGCTGTAGCTTCCATTTTCATCTTCTAGTATGCTTNTGTTAAGGGTCTAACCCAAAACTGGTTTTGGATCCTCTGCAAGCAGTGGGGAAATAATCTAGCATGCTTTTCAATTTTCATTTTTTTAAAATATACCGTAAGGGTATCTTTGAGCTGTAACTTCTATTTAATTTAAATAACGAATGGTCTAAAGAAAATACACAAGTTTTGTATTAAAAATATGTAAGCCTTTCGCAAAAGTGTGAATTATCCATATGTATTTTATGATTATAGGGGTCCATTTTGTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00209	4	2295	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11147	DHRS4	EC:1.1.-.-	Retinol metabolism	map00830
			Peroxisome	map04146

Gene Ontology

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000209s00013444.1	PF13561.1	adh_short_C2	17	254	1.20E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.191
SRR1783600	control	20.092
SRR1783602	moderate drought stress	15.914
SRR1811619	moderate drought stress	16.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.128
DRR006520	Root Summer glycyrrhizin high producing strain	40.568
DRR006521	Root Winter glycyrrhizin high producing strain	61.386
DRR006522	Root Winter glycyrrhizin high producing strain	60.632
DRR006523	Root Summer glycyrrhizin low producing strain	46.032
DRR006524	Root Summer glycyrrhizin low producing strain	45.976
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.775
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.521

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.623
SRR2868004	Drought Stress (root)	56.615
SRR2967015	Control (root)	52.560

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.776
SRR9715740	Leaf	24.989
SRR9715741	Leaf	23.816
SRR9715739	Root	21.615
SRR9715742	Root	22.389
SRR9715743	Root	23.402

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.234
SRR8749028	MeJA induced 9h	38.595
SRR8749029	MeJA induced 9h	39.205
SRR8749030	Uninduced	48.348
SRR8749031	Uninduced	35.143
SRR8749032	Uninduced	42.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.109
SRR8400027	Control - Root	48.550