Gene detail information of Glyur000208s00014304 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46460.1 | 1.00E-10 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | AFK41923.1 | 4.07E-57 | unknown [Lotus japonicus] |
| Swissprot | tr|P0C2F6|RNHX1_ARATH | 5.00E-10 | Putative ribonuclease H protein At1g65750 |
| trEMBL | tr|I3SNT1|I3SNT1_LOTJA | 2.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:AFK41923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 254090 | 254836 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014304.1 | PF13456.1 | RVT_3 | 138 | 218 | 5.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 207.082 |
| SRR1783600 | control | 203.728 |
| SRR1783602 | moderate drought stress | 307.137 |
| SRR1811619 | moderate drought stress | 304.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 262.826 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 223.085 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.852 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 207.862 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 213.707 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 55.180 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 162.677 |
| SRR2868004 | Drought Stress (root) | 160.447 |
| SRR2967015 | Control (root) | 143.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 64.174 |
| SRR9715740 | Leaf | 36.916 |
| SRR9715741 | Leaf | 76.934 |
| SRR9715739 | Root | 481.974 |
| SRR9715742 | Root | 602.562 |
| SRR9715743 | Root | 515.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.164 |
| SRR8749028 | MeJA induced 9h | 32.967 |
| SRR8749029 | MeJA induced 9h | 26.208 |
| SRR8749030 | Uninduced | 3.376 |
| SRR8749031 | Uninduced | 2.777 |
| SRR8749032 | Uninduced | 2.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 318.204 |
| SRR8400027 | Control - Root | 371.097 |