Gene detail information of Glyur000208s00014302 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27870.1 | 8.00E-05 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| NR | XP_004496386.1 | 7.07E-30 | PREDICTED: uncharacterized protein LOC101497185 [Cicer arietinum] |
| trEMBL | tr|I3SNT1|I3SNT1_LOTJA | 2.00E-27 | Uncharacterized protein {ECO:0000313|EMBL:AFK41923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 246942 | 247379 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014302.1 | PF13456.1 | RVT_3 | 104 | 143 | 1.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.161 |
| SRR1783600 | control | 39.089 |
| SRR1783602 | moderate drought stress | 29.570 |
| SRR1811619 | moderate drought stress | 29.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 71.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.209 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.051 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.023 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.694 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.059 |
| SRR2868004 | Drought Stress (root) | 18.451 |
| SRR2967015 | Control (root) | 15.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.798 |
| SRR9715740 | Leaf | 4.293 |
| SRR9715741 | Leaf | 4.996 |
| SRR9715739 | Root | 95.033 |
| SRR9715742 | Root | 132.509 |
| SRR9715743 | Root | 113.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.372 |
| SRR8749028 | MeJA induced 9h | 0.917 |
| SRR8749029 | MeJA induced 9h | 2.620 |
| SRR8749030 | Uninduced | 0.152 |
| SRR8749031 | Uninduced | 0.123 |
| SRR8749032 | Uninduced | 0.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.447 |
| SRR8400027 | Control - Root | 72.139 |