Gene detail information of Glyur000208s00014297.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34270.1 | 1.00E-180 | Exostosin family protein |
| NR | XP_004496813.1 | 0 | PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase-like, partial [Cicer arietinum] |
| Swissprot | tr|Q9FLA5|ARAD2_ARATH | 5.00E-81 | Probable arabinosyltransferase ARAD2 |
| trEMBL | tr|A0A072VQ97|A0A072VQ97_MEDTR | 0 | Exostosin family protein {ECO:0000313|EMBL:KEH43593.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 232682 | 235819 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014297.1 | PF03016.10 | Exostosin | 62 | 409 | 8.10E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.542 |
| SRR1783600 | control | 10.640 |
| SRR1783602 | moderate drought stress | 8.568 |
| SRR1811619 | moderate drought stress | 8.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.701 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.754 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.586 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.121 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.963 |
| SRR2868004 | Drought Stress (root) | 14.864 |
| SRR2967015 | Control (root) | 15.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.492 |
| SRR9715740 | Leaf | 3.079 |
| SRR9715741 | Leaf | 6.254 |
| SRR9715739 | Root | 2.406 |
| SRR9715742 | Root | 4.758 |
| SRR9715743 | Root | 3.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.129 |
| SRR8749028 | MeJA induced 9h | 12.942 |
| SRR8749029 | MeJA induced 9h | 8.229 |
| SRR8749030 | Uninduced | 8.640 |
| SRR8749031 | Uninduced | 1.484 |
| SRR8749032 | Uninduced | 2.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.694 |
| SRR8400027 | Control - Root | 8.575 |