Gene detail

Gene detail information of Glyur000208s00014292.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34210.1	0	somatic embryogenesis receptor-like kinase 2
NR	XP_004496399.1	0	PREDICTED: somatic embryogenesis receptor kinase 2-like [Cicer arietinum]
COG	YP_004092358.1	6.00E-21	serine/threonine protein kinase with PASTA sensor(s) [Ethanoligenens harbinense YUAN-3]
Swissprot	tr\|Q94AG2\|SERK1_ARATH	0	Somatic embryogenesis receptor kinase 1 (Precursor)
trEMBL	tr\|I1NH81\|I1NH81_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G31320.1}

Sequence

Transcript Sequence

>Glyur000208s00014292.1
GTTTTTGACTGCGTTCGGGCAGCGGGCAACACCGTTCGGGCAGCTCCCTTTCCCTTTCTCTCTCTACACTACACTCACTACACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTGTGCACGCCTCCCTCAAAAAAGATAACAATCTTACACTCTCACCAGCTGACAGAGACATAGAAAGAGAAAGAGAAGAAGAGAGAGAGTGTGTGTATCTGTGTTCTTCAGAAGCTAGCTAGCTAGAGTGTGAAAGTGAAAAGGGCAAAAGAGTTTTTTTTTTAATTTATTTTCATAATAACTTGAAGAGAAAAATTGAAAGTAGTTAAAAATGTTGTGATTCTTTTTGGTTCAAAAAAAGTTTGGTTGTTTTGGGGGGTTTGATTTTATGGGTTAGTCCAAAAGAGGCGTATTTTGGCGAGATCGGGTTCTGGGTGTGGTGCTAATGGTGGTGATTTGGGGTGCTTGCATGTGAGATTTGGGAGTTAGGGTTTAGGGTCATTTGAGTTTGTTGTGACGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGGGGTTATGTGATGGTGTATTCTGGTGTGAGTTATTGTTTGGATCTGAGGTTATTGACTACATAGTCAGATGGGGAGAGTGTTCTGGGCTTTAGCTTTCATTTGGGGGCTCTTGTTGGTTCATCCACTATGGCTGATTTCTGCTAACATGGAAGGTGATGCTTTACATAGCTTGAGGACAAATTTACAAGATCCTAACAATGTTTTGCAGAGTTGGGATCCTACACTTGTCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAATAGTGTCATAAGGGTTGATCTGGGAAATGCTGCTTTATCTGGTCAACTAGTTCCACAGCTTGGTCAACTCAAGAATTTGCAGTATTTGGAACTTTACAGCAATAACATCACTGGTCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAACCGATTCGGTGGCCCTATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTCCGGCTTAACAACAACAGCTTGATGGGTCCTATTCCGATGACACTGACTAATATTTCAGCTCTCCAAGTTCTGGATTTGTCTAATAACCAGCTTTCAGGCGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAACAACTTGAATCTATGTGGACCNGTCACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCTCCCCCTTTTGTCCCTCCACCCCCAATTTCTGTCCCAGGAGGTAACAGTGCAACTGGGGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCATGGTGGCGTAGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTTGGGCAGCTTAAGAGGTTCTCACTACGAGAATTGCAAGTTGCAACAGATAGTTTCAGCAATAAGAACATTCTTGGGAGGGGAGGGTTTGGTAAGGTGTACAAAGGACGCTTGGCAGATGGTTCATTAGTTGCTGTCAAAAGATTGAAAGAGGAGCGGACACCCGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTCCGCTTACGTGGGTTCTGTATGACACCAACAGAAAGATTACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCTGCACATCAAGAGCCCCTAGATTGGCCAACAAGGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTTTCATATTTGCATGATCACTGTGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCTAACATATTGTTGGATGAGGAATTCGAGGCTGTTGTTGGGGATTTTGGATTGGCAAAGCTTATGGATTACAAGGACACCCATGTGACAACTGCTGTACGGGGTACAATTGGGCATATAGCTCCAGAATACCTATCTACTGGTAAATCTTCAGAGAAAACAGACGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAAAGAGCTTTCGACCTTGCTCGGCTTGCAAATGATGATGATGTTATGCTGCTTGATTGGGTAAAAGGACTCCTGAAAGAGAAAAAGCTTGAAATGTTGGTAGATCCTGATCTTCATAACAACTACATAGAAGCTGAGGTAGAGCAGTTAATCCAGGTGGCACTGCTCTGCACACAAGGTTCCCCTATGGACCGGCCGAAGATGTCGGAAGTGGTGAGAATGCTTGAAGGGGATGGCTTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGGTTCTACGCCAGGAAGTGGAGCTTGCCCCCCATCCCAATTCTGATTGGATTGTTGACTCTACTGAAAATCTACATGCAGTTGAACTATCTGGTCCAAGGTGACCCGGGCACACTAGTAATGAAGAAAAAAGGAATGGAATTATTTATGACTTATTTTTTAACTATAAAAGTTTTCTCACTTTTTTCTTTTTCTTTTTTGGTTCCTTGAAGTACCGTATCCTGATTACATCTCTTGTAAGTCCACTGCATTATATTCATTTACATTTGTGCATAGGGGGTCGCTTTGTCAAGTTGCAATTTGTATCATCTTGCTGCAGTTTGATGAAGTGATGTTTACTTAGATGAAACAATGGCAGCTTAATCTTTTTGTACACCCACTTTTCATGCTTGTTCAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00208	183029	189488	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000208s00014292.1	PF08263.7	LRRNT_2	26	65	1.50E-10
Glyur000208s00014292.1	PF00560.28	LRR_1	93	115	0.045
Glyur000208s00014292.1	PF00560.28	LRR_1	166	183	0.043
Glyur000208s00014292.1	PF00069.20	Pkinase	303	572	3.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.317
SRR1783600	control	26.516
SRR1783602	moderate drought stress	23.551
SRR1811619	moderate drought stress	23.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.114
DRR006520	Root Summer glycyrrhizin high producing strain	31.608
DRR006521	Root Winter glycyrrhizin high producing strain	8.770
DRR006522	Root Winter glycyrrhizin high producing strain	8.502
DRR006523	Root Summer glycyrrhizin low producing strain	40.378
DRR006524	Root Summer glycyrrhizin low producing strain	40.839
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	72.757
SRR2868004	Drought Stress (root)	71.717
SRR2967015	Control (root)	74.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.904
SRR9715740	Leaf	21.018
SRR9715741	Leaf	20.684
SRR9715739	Root	16.264
SRR9715742	Root	29.651
SRR9715743	Root	27.983

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	109.725
SRR8749028	MeJA induced 9h	94.121
SRR8749029	MeJA induced 9h	65.074
SRR8749030	Uninduced	73.470
SRR8749031	Uninduced	32.190
SRR8749032	Uninduced	25.126

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.165
SRR8400027	Control - Root	69.962