Gene detail information of Glyur000208s00014289 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53940.1 | 3.00E-60 | Yippee family putative zinc-binding protein |
| NR | XP_003543228.1 | 5.47E-86 | PREDICTED: protein yippee-like At5g53940-like [Glycine max] |
| Swissprot | tr|Q9FN32|YIPL7_ARATH | 1.00E-76 | Protein yippee-like At5g53940 |
| trEMBL | tr|I1M353|I1M353_SOYBN | 2.00E-86 | Protein yippee-like {ECO:0000256|RuleBase:RU110713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 162059 | 166918 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014289.1 | PF03226.9 | Yippee-Mis18 | 14 | 105 | 5.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.755 |
| SRR1783600 | control | 31.824 |
| SRR1783602 | moderate drought stress | 63.928 |
| SRR1811619 | moderate drought stress | 63.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.628 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.498 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.448 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.557 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.248 |
| SRR2868004 | Drought Stress (root) | 26.758 |
| SRR2967015 | Control (root) | 29.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.368 |
| SRR9715740 | Leaf | 29.175 |
| SRR9715741 | Leaf | 33.804 |
| SRR9715739 | Root | 3.676 |
| SRR9715742 | Root | 10.659 |
| SRR9715743 | Root | 8.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.143 |
| SRR8749028 | MeJA induced 9h | 74.940 |
| SRR8749029 | MeJA induced 9h | 36.516 |
| SRR8749030 | Uninduced | 64.610 |
| SRR8749031 | Uninduced | 30.821 |
| SRR8749032 | Uninduced | 30.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.388 |
| SRR8400027 | Control - Root | 34.002 |