Gene detail information of Glyur000208s00014284 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15120.1 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004517132.1 | 0 | PREDICTED: uncharacterized protein LOC101513926 [Cicer arietinum] |
| COG | YP_023234.1 | 7.00E-62 | cell division cycle protein 48 [Picrophilus torridus DSM 9790] |
| Swissprot | tr|F4IAE9|Y1591_ARATH | 1.00E-79 | ATPase family AAA domain-containing protein At1g05910 |
| trEMBL | tr|A0A072VKJ3|A0A072VKJ3_MEDTR | 0 | P-loop nucleoside triphosphate hydrolase superfamily protein, putative {ECO:0000313|EMBL:KEH38675.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 141131 | 148056 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014284.1 | PF13771.1 | zf-HC5HC2H | 408 | 487 | 6.50E-15 |
| Glyur000208s00014284.1 | PF00004.24 | AAA | 613 | 748 | 5.20E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.336 |
| SRR1783600 | control | 6.332 |
| SRR1783602 | moderate drought stress | 5.861 |
| SRR1811619 | moderate drought stress | 5.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.012 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.995 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.835 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.761 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.617 |
| SRR2868004 | Drought Stress (root) | 17.082 |
| SRR2967015 | Control (root) | 17.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.320 |
| SRR9715740 | Leaf | 7.131 |
| SRR9715741 | Leaf | 7.717 |
| SRR9715739 | Root | 1.497 |
| SRR9715742 | Root | 11.013 |
| SRR9715743 | Root | 9.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.118 |
| SRR8749028 | MeJA induced 9h | 7.444 |
| SRR8749029 | MeJA induced 9h | 2.588 |
| SRR8749030 | Uninduced | 2.579 |
| SRR8749031 | Uninduced | 3.610 |
| SRR8749032 | Uninduced | 2.155 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.488 |
| SRR8400027 | Control - Root | 13.731 |