Gene detail information of Glyur000208s00014268 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53210.1 | 1.00E-58 | sodium/calcium exchanger family protein / calcium-binding EF hand family protein |
| NR | XP_003540477.1 | 0 | PREDICTED: uncharacterized protein LOC100800452 [Glycine max] |
| trEMBL | tr|K7M290|K7M290_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G34750.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00208 | 55016 | 60189 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000208s00014268.1 | PF13833.1 | EF-hand_8 | 329 | 358 | 5.50E-05 |
| Glyur000208s00014268.1 | PF13499.1 | EF-hand_7 | 405 | 467 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.018 |
| SRR1783600 | control | 0.018 |
| SRR1783602 | moderate drought stress | 0.018 |
| SRR1811619 | moderate drought stress | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.105 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 169.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 169.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.467 |
| SRR2868004 | Drought Stress (root) | 1.102 |
| SRR2967015 | Control (root) | 1.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 68.233 |
| SRR9715740 | Leaf | 95.311 |
| SRR9715741 | Leaf | 65.284 |
| SRR9715739 | Root | 0.055 |
| SRR9715742 | Root | 0.030 |
| SRR9715743 | Root | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.044 |