Gene detail

Gene detail information of Glyur000208s00014265

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein
NR	XP_007149412.1	hypothetical protein PHAVU_005G068100g [Phaseolus vulgaris]
trEMBL	tr\|V7BXV4\|V7BXV4_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW21406.1}

Sequence

Transcript Sequence

>Glyur000208s00014265.1
CATCGAGATCCTTTCCTCTTTAATCCTTTTTCCAAATCCCCATTTTCATTTCATACTCAACAGTCAACTCAACGGGAACACTTCCTCTAACAGACTCACATACAACAAATGTTTCTCACCCATTAGCCTTAGCCATTAGCCTCGTATAGTTAGTTGTTAACAACCAACCAACCAACCATGTCTCTCTCTNTCACTACCCTCTCTCACCACCACCGCACCGCCCTCTTCCTCTTCCTCTTGGCGGTGATCCTCTGCGGTCACGCCCACGGTCGGTTCCTGAGCCGCGATCTGGTTTCCGATGGCGTGGGAAGCGTGCTCCGACTCCCAACGGGGTTGGCGGTGGAATCCACGTGCGAGCAGACCTATGGATTCTTACCGTGCACCACCACCGTGTTGGGGAACTTGTTCCTGATCGCGGTGTATGGGTTCNTAATGTTCCAAGCCGCAACGTTCTTATCGAACGGTAGCGAGCTCTTGCTCGAGATCTTAGGCCCTGGCATTGTTGGTGGCCTCTTCCTCCCTATCCTCGGTGCCCTCCCCGATGCCATGCTCATTCTCGTGTCTGGGCTTTCAGGCAGTAAAGAAACTGCTCAAAGCCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCAACAGTGCTTCTTCTGACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGATATTGAGGGTTCAATTGCAATTGATTCACAAGACACTAGGGGGNTTAGTTTAACCGGTTCTGGTGTTAGCACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTTTATCTGTCGTTCCATTTGTGATTGTTCAATTACCACAAGCTCTCAGTTCAACTTCTGGAAGGCACTTGGCTGTTTTGATTGCTCTTATTGTCTCTATCTGTTTATTGATTTCTTATTGCCTTTACCAGATTTTCCAGCCCTGGATACAAAGGAGAAAATTGGAATATATTAAACACAGGCATGTTATTTTAGGACTTTTGAGACATTTGAAGATGCATTCATTGGGAAGGCTTCTGAGAGATGACGGTGAACCTGATAAAGAAGTTATTAGAAAGTTGTTTGCAACAATTGATGAAAATAAAGATGGNAGTCTTACTCATGGTGAATTGAGAGCATTGCTTGTTGGAATTCAATTTGAGGAGATTGACCTGGATCATGATGACGCTGTGAGAAGAATAATGGGGGATTTTGATACTTCTCGNAATCAACTTATTGATGAAGAAGAATTTGTTAGTGGTGTCTGTAGATGGCTTCAAAGGGCCAGGCGTNCTCGAGCTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACGTAGAAACAAGGATGGAACATGATCTTCTGGATGTGGGGGGTCAGAGTGAGGAAGATGGTGAGGTTGTTGAGAATGCTAAATGGACTTCCATCAAAGCAGCACTACTGCTGCTACTGGGTGCACTTATTGCCGCTGCATTTGCTGATCCCCTGGTTGATGCAGTCGATAACTTTTCTGATGCTACAAGTATTCCTGCTTTCTTCATTTCCTTCATTTTTCTGCCTCTAGCAACCAATTCAAGTGAAGCGGTATCGGCAATAATTTTTTCTAGTCGTGATAAGAGGCAAACTGCCTCATTAACATTTTCTGAGATATACGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTCTTGGCCCTCGTCTATGCAAGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATCCTCATCGTTTGCATTGTCATGGGTGTCTTTGCCAGTTTCCGCACTGTCTTCCCTCTATGGACAACTATACTGGCTATCCTACTCTATCCCTTCTCCCTGGCACTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCATAGGTCAAACAATGCTTTCTATGTTATTGTCTTCTATGGCTCTTTTCCTTCCTGGGGTGTGTTATTCAATATTGTAGTTCTTTGCGAGAGACTATGGTGTTGGTGACTTCCATTTATTATTATGGTGGACTTAACATCCATTGGGAACGGTTTGAGTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00208	25727	31005	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000208s00014265.1	PF13499.1	EF-hand_7	297	359	7.50E-11
Glyur000208s00014265.1	PF01699.19	Na_Ca_ex	434	565	9.20E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.491
SRR1783600	control	32.568
SRR1783602	moderate drought stress	28.510
SRR1811619	moderate drought stress	28.414

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.137
DRR006520	Root Summer glycyrrhizin high producing strain	39.716
DRR006521	Root Winter glycyrrhizin high producing strain	98.682
DRR006522	Root Winter glycyrrhizin high producing strain	95.768
DRR006523	Root Summer glycyrrhizin low producing strain	33.350
DRR006524	Root Summer glycyrrhizin low producing strain	33.153
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.284
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.748

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.222
SRR2868004	Drought Stress (root)	39.430
SRR2967015	Control (root)	40.172

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.765
SRR9715740	Leaf	27.033
SRR9715741	Leaf	48.937
SRR9715739	Root	28.675
SRR9715742	Root	49.308
SRR9715743	Root	45.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.710
SRR8749028	MeJA induced 9h	24.901
SRR8749029	MeJA induced 9h	11.177
SRR8749030	Uninduced	11.580
SRR8749031	Uninduced	2.657
SRR8749032	Uninduced	2.838

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.854
SRR8400027	Control - Root	73.106