Gene detail information of Glyur000207s00015920.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56280.1 | 1.00E-124 | COP9 signalosome subunit 6A |
| NR | AFK46238.1 | 0 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8W206|CSN6A_ARATH | 6.00E-167 | COP9 signalosome complex subunit 6a |
| trEMBL | tr|I3T146|I3T146_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK46238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00207 | 241461 | 248998 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000207s00015920.1 | PF01398.16 | JAB | 7 | 135 | 4.10E-25 |
| Glyur000207s00015920.1 | PF13012.1 | MitMem_reg | 210 | 268 | 5.30E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.955 |
| SRR1783600 | control | 36.257 |
| SRR1783602 | moderate drought stress | 23.664 |
| SRR1811619 | moderate drought stress | 23.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.872 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.678 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.867 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.230 |
| SRR2868004 | Drought Stress (root) | 26.769 |
| SRR2967015 | Control (root) | 25.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.442 |
| SRR9715740 | Leaf | 22.701 |
| SRR9715741 | Leaf | 31.537 |
| SRR9715739 | Root | 12.775 |
| SRR9715742 | Root | 27.615 |
| SRR9715743 | Root | 26.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.801 |
| SRR8749028 | MeJA induced 9h | 26.411 |
| SRR8749029 | MeJA induced 9h | 31.178 |
| SRR8749030 | Uninduced | 28.905 |
| SRR8749031 | Uninduced | 16.623 |
| SRR8749032 | Uninduced | 21.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.276 |
| SRR8400027 | Control - Root | 33.193 |