Gene detail

Gene detail information of Glyur000207s00015913

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G09320.1	1.00E-72	Vacuolar sorting protein 9 (VPS9) domain
NR	AES68516.2	0	vacuolar protein sorting-associated protein VPS9 [Medicago truncatula]
Swissprot	tr\|Q9LT31\|VPS9A_ARATH	2.00E-84	Vacuolar protein sorting-associated protein 9A
trEMBL	tr\|G7J0B1\|G7J0B1_MEDTR	0	Vacuolar protein sorting-associated protein VPS9 {ECO:0000313\|EMBL:AES68516.2}

Sequence

Transcript Sequence

>Glyur000207s00015913.1
ATGCATATATGTAATGATCAACATCAACATCAACAACGTATTTCCATGATTTTCTCCACCGCATGCGACACCCTGCTTCCCTCGACCTCTTTCATTGTATCATTTTCATTTGACCAACCGAAACCTGAAAGTGATGGGAAAAGAGTTCAAGACTTCTTTCTGTCAATGGAAGTTGCAATCAGAGATCATCCACTGTGGGCCAGTGCCACTGAAGAAGACATTGATTGTGCCATGGAGGGTTTAGAAAAATATATATTGACTAAATTGTTCTCCCGGACATTCGCTACTTCTCCTGAGGATGCAAAGATTGACCNTGAAATCTCGGAGAAAATAAGCATGCTCCAAACCTTTCTGAAGCCTGAACATTTGGATATACCACCAATTCTTCATAATGAAGCCTCATGGCTGCTTGCAGAGAAGGAATTGCAGAAAATCAATGCTTTCAAAGCTCCCCAAGAGAAACTCTTGAGCATTATGAATTGTTGCAGGGTTATCAACAATCTGTTGCTCAATGCTGCAATGTCTGAGCATGTACCAGCTGGGGCAGATGACTTTCTCCCTGCGAATCCGCCAATGTTGCATTCTAACCTCAAATTCATCAAGCTGTTCAGAAGGCAAGCAAAACTCATCTCAGAAGCTGAATATTATTTCACAAATCTCATGTCAGCCAAGACATTTATAGTTGACTTAAATGCTAAATCTCTTTCAATGGATGAAACCAACTTTGAGGAGTGCATGCAAGCAGCCAAATTGGCCAAGAAAGCCACAAGTGAATTATCCTCTACATGTCAAAACAAACAGCAAGGGAAGAACGAGTGCAGTTTTTCAAAGAAAATGCATAACAAACTTGATCCTGGAGTTTTGCTGCATGGATCAAATTTTCCGTACATGGAAGCAAAGAGCGAAGATCTATCGATTGGAGATATGGACATATTATTATGTCACTACAAGGATTTAGTTGCCAAGTACACAATCCTGTGCAAAGCTATCAATTGCCTTTCAATGCCAGAGAAAGAACCACTGTTTCGTCAGCTAGAAATGCAAGGAGCAGGAGGTCTGCTTTCNCAGCACCGTCGAATCAGCACAGACACAAATGATATCAACCCATCCCTCACCAAGATAAATGACAATAAGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00207	172994	177258	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000207s00015913.1	PF02204.13	VPS9	137	230	6.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.675
SRR1783600	control	2.464
SRR1783602	moderate drought stress	1.871
SRR1811619	moderate drought stress	1.855

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.763
DRR006520	Root Summer glycyrrhizin high producing strain	4.115
DRR006521	Root Winter glycyrrhizin high producing strain	8.428
DRR006522	Root Winter glycyrrhizin high producing strain	8.704
DRR006523	Root Summer glycyrrhizin low producing strain	5.362
DRR006524	Root Summer glycyrrhizin low producing strain	5.597
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.310
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.181

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.307
SRR2868004	Drought Stress (root)	6.729
SRR2967015	Control (root)	5.791

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.319
SRR9715740	Leaf	2.637
SRR9715741	Leaf	3.919
SRR9715739	Root	0.020
SRR9715742	Root	1.026
SRR9715743	Root	0.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.135
SRR8749028	MeJA induced 9h	8.346
SRR8749029	MeJA induced 9h	6.226
SRR8749030	Uninduced	9.850
SRR8749031	Uninduced	12.790
SRR8749032	Uninduced	9.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.643
SRR8400027	Control - Root	3.988