Gene detail information of Glyur000207s00015912 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09320.1 | 5.00E-54 | Vacuolar sorting protein 9 (VPS9) domain |
| NR | AES68516.2 | 3.41E-163 | vacuolar protein sorting-associated protein VPS9 [Medicago truncatula] |
| Swissprot | tr|Q9LT31|VPS9A_ARATH | 1.00E-59 | Vacuolar protein sorting-associated protein 9A |
| trEMBL | tr|G7J0B1|G7J0B1_MEDTR | 1.00E-163 | Vacuolar protein sorting-associated protein VPS9 {ECO:0000313|EMBL:AES68516.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00207 | 170540 | 172974 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000207s00015912.1 | PF02204.13 | VPS9 | 62 | 155 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.228 |
| SRR1783600 | control | 2.329 |
| SRR1783602 | moderate drought stress | 1.959 |
| SRR1811619 | moderate drought stress | 2.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.071 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.726 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.082 |
| SRR2868004 | Drought Stress (root) | 2.523 |
| SRR2967015 | Control (root) | 3.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.370 |
| SRR9715740 | Leaf | 3.547 |
| SRR9715741 | Leaf | 3.489 |
| SRR9715739 | Root | 0.005 |
| SRR9715742 | Root | 0.693 |
| SRR9715743 | Root | 0.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.618 |
| SRR8749028 | MeJA induced 9h | 5.880 |
| SRR8749029 | MeJA induced 9h | 6.677 |
| SRR8749030 | Uninduced | 10.772 |
| SRR8749031 | Uninduced | 11.502 |
| SRR8749032 | Uninduced | 8.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.473 |
| SRR8400027 | Control - Root | 2.729 |