Gene detail information of Glyur000207s00015908 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30695.2 | 5.00E-41 | |
| NR | XP_004499671.1 | 1.45E-107 | PREDICTED: trigger factor-like [Cicer arietinum] |
| COG | YP_007169703.1 | 1.00E-08 | trigger factor [Halothece sp. PCC 7418] |
| trEMBL | tr|G7IYL6|G7IYL6_MEDTR | 1.00E-104 | Bacterial trigger factor protein {ECO:0000313|EMBL:AES68513.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00207 | 145579 | 148144 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000207s00015908.1 | PF05697.8 | Trigger_N | 119 | 236 | 4.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.400 |
| SRR1783600 | control | 1.090 |
| SRR1783602 | moderate drought stress | 1.495 |
| SRR1811619 | moderate drought stress | 1.530 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.632 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.392 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.354 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.408 |
| SRR2868004 | Drought Stress (root) | 2.490 |
| SRR2967015 | Control (root) | 2.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.653 |
| SRR9715740 | Leaf | 11.661 |
| SRR9715741 | Leaf | 8.954 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.984 |
| SRR9715743 | Root | 0.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.372 |
| SRR8749028 | MeJA induced 9h | 0.754 |
| SRR8749029 | MeJA induced 9h | 1.011 |
| SRR8749030 | Uninduced | 0.831 |
| SRR8749031 | Uninduced | 0.229 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.223 |
| SRR8400027 | Control - Root | 3.269 |