Gene detail

Gene detail information of Glyur000207s00015905

Functional Annotation

Database	Orthologs	E value	Annotation
NR	KHN20593.1	0	Putative glucan 1,3-beta-glucosidase A [Glycine soja]
COG	YP_002354525.1	3.00E-42	glucan 1,3-beta-glucosidase [Thauera sp. MZ1T]
trEMBL	tr\|I1KFT0\|I1KFT0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G47750.1}

Sequence

Transcript Sequence

>Glyur000207s00015905.1
GTTAGATATGCAACCATATAAGAAGACAAATTTGAAGCCTTGAATCCTATATATAGTGTCCTTGTTTGGCGTTGCAAGCCAAATTCAGGATCATTTTCAACATGGAATGTCGATACTATTTGAACTTTTTGTTGGCTTTATGCCTCTCATGTACTCACTCTGTTTTNGTTGCGCAAAATTTGCCATACAAAGCTGTGAATCTTGGAAACTGGCTTGTTGCTGAGGGGTGGATGAAACCTTTCCTCTTTGAAGGGATTCTCAACAAAGATCTCTTGAGGTATCTCACTGCTGAAGATGGAGGAGGAGCTGCTNTTGTAGCCAACCGTGGTTCAGCTTCTGGTTGGGAAACATTCAGGCTTTGGAGGGTCAGTGACTCATCCTTCAATTTTAGAGTTTTTAACAAGCAATTTGTGGGAATGGAAAATCAAGGCGGTGGAAACAAAATTGTAGCAGTTTCTGTTTCACCCAACAACTCGGAAACATTCAAGATTATAAGGAATGATAATGACCCCCTCAAAATTCGAATCCAAGCATCAAATGGCTTGTTTTTACAGGTTCAATCAGAGACATCAGTGTCTGCAGATTATCAAGGAACAAGTTGGGAAGAAAGTGACCCATCAGTATTCAATATGAAAATTGTAAATACTTTACAAGGAGAGTACCAACTTACAAATGGTTATGGCCCAGATAGAGCTCCTCAAGTCATGCAGAATCATTGGAGTACATACATAGTTGAAGATGATTTTAGATTCATGTCAGAAAATGGGTTAAATGCAGTGAGAGTACCTGTTGGATGGTGGATAGCCAAAGACCCAAACCCACCTAAGCCTTTTGTTGGAGGATCTTTGGCAGCACTGGACAATGCTTTCACATGGGCACAAAACCATGGGATGAAAGTGATTGTGGACTTGCATGCAGCTGAAGGCTCTCAAAATGGCAATGACCACAGTGGGACAAGAGATGGATATACAGAGTGGGGTGATTCATACATACCACAATCGATTTCAGTCATAGACTTCTTAGCAGAAAGATATGGTAATAGACCAAGTCTTGGAGGAATAGAGCTGATGAATGAGCCACAGGGTGTCAATCTAGACAGCCTCAAGACATATTACAAGTTAGCTTATGATGCTGTGAGGAANCANAGTTCAAGTGCTTATGTGATCATGTCAAATCCGTTGGATGCAGATTCTAAAGTGCTTCTCTCATTTGCCAAAGACTTTGACAGAGTAGTCATTGATGTGCATTACTACAATCTTTATTCGGGTAAATTCAACAACATGAATGTTCAACAGAATATTGACTACATAAGAAATGATAGAGCCTCCGATCTCAACGGTGTCTCATCAACAAATGCTCTTAGTTTTGTAGGGGAGTGGACTGGTGAGTGGAGTATACAAGGTGCGTCCAAGGAAGAGTACCAAAGATATGCCCAAGCCCAATTAGATGTGTATTCTCGTGCAACTTTTGGATGGGCATATTGGGCCTACAAGTGTACATATAACCATTGGAGCCTCAAGTGGATGATCGAGAATGGTTACATCAAACTCTAAATGCAGCTGTTGACCAAAAAAAAAACTCTAAATGCAGCTGTTGACCAAAAAAAAAAGCATATTTTTGTTGTGCTTCTACTAATTATCACTATATAATGCAGCTAAGCTAGCAAGTGTAGTTGCTTTGGTCATGGAAGGCATGCTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00207	125744	129815	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0007015 actin filament organization

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0051015 actin filament binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000207s00015905.1	PF00150.13	Cellulase	202	463	2.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.119
SRR1783600	control	0.988
SRR1783602	moderate drought stress	0.728
SRR1811619	moderate drought stress	0.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.748
DRR006520	Root Summer glycyrrhizin high producing strain	0.758
DRR006521	Root Winter glycyrrhizin high producing strain	5.097
DRR006522	Root Winter glycyrrhizin high producing strain	4.774
DRR006523	Root Summer glycyrrhizin low producing strain	1.531
DRR006524	Root Summer glycyrrhizin low producing strain	1.381
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.751

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.767
SRR2868004	Drought Stress (root)	8.812
SRR2967015	Control (root)	1.820

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.564
SRR9715740	Leaf	13.735
SRR9715741	Leaf	45.105
SRR9715739	Root	0.637
SRR9715742	Root	5.987
SRR9715743	Root	5.174

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	115.819
SRR8749028	MeJA induced 9h	232.366
SRR8749029	MeJA induced 9h	322.172
SRR8749030	Uninduced	366.967
SRR8749031	Uninduced	436.382
SRR8749032	Uninduced	247.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.851
SRR8400027	Control - Root	3.730