Gene detail

Gene detail information of Glyur000207s00015900

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62350.1	1.00E-53	Plant invertase/pectin methylesterase inhibitor superfamily protein
NR	XP_003598239.1	2.23E-104	21 kDa protein [Medicago truncatula]
Swissprot	tr\|P17407\|21KD_DAUCA	3.00E-70	21 kDa protein (Precursor)
trEMBL	tr\|G7IYJ3\|G7IYJ3_MEDTR	8.00E-105	Uncharacterized protein {ECO:0000313\|EMBL:AFK36590.1}

Sequence

Transcript Sequence

>Glyur000207s00015900.1
GGCCCTTTTTGTGTCAAAATTCCTTTTTTGCTCTGAGTACCCCACACAGAGGTCGGTTAGCGTAGGATATGGTTGTGGTAAAGTTGAGCTCGTGACTCTGAATCCCCCTCCCTCTATATATATCTAGGATCCAATTGTATCCTTTATTCTCAGTTCTCACAAATCACAAACAAACCCAATAATTTTTCTTCTTCTCCCTACCAACTACCAACAACAAAGTCTCAAATCCATCCCCAACCTAACACCACATGGCAAAGGGAAATCCCCTTCTTTTCCTTCTCCTCTCTGTCCTGTCCATAGCAGTAGTTGCAGCAGCCCCAACCAGCAACAGCTTCATCAAGTCTTCTTGCAGCACAACCCAATACCCATCACTCTGTGTTGAGTCCCTCTCCGNGTACGCCACCACCATCCAACAAGACCCTCACACACTGGTCCAAACAGCACTTTCACTCAGCCTCAACAGGACGCAGTCCACAAGGGCCTTTGTGACAAAGTGCAAGTCCTTCAAGGGGCTCAAGCCAAGGGAATATGCAGCACTCCATGACTGTGTGGAGGAAATCAATGACAGCGTGGATAGGCTCACACGTTCTTTGAAGGAGCTCAAGCTTTGCAGGGTTAAAGGTGAGGACTTTTCATGGCACATAAGCAATGTTGAGACATGGGTCAGCTCTGCCTTGACTGATGAGAGCACTTGTAGTGATGGGTTTGCTGGGAAGTCACAAAATGGGAGGATCAAGAACNCCATTAGGGCTAGAATGGTCAATGTTGCTCAGGTCACTTCCAATGCTCTCTCTCTCATCAACCAGTATGCTGCAAAACATTAGCTAGGAATAAGAAGAGAGAGAAAAAAAACGACAACGTTTTTGCTTTGAGGCTGTTGGGGAACACCTCAATGTGGTTAATTCCCTTTTTATGTTTTATCAATGTGTGATGTGTAATGTGTAATTCTATATAATCTATATAGGATATGGATCTTTTTGTGATGCTTTTCAAGTGTGAAATAGAGTTCCTTTTCTTTTTTTAATATATGCTTTTCTTGTTACTTATCTCAACTACTGGATCCAGGGAAGTAATGTTCCTAACCTAGCACACGGTTTTCTTGTTGTGCATATTATAACATGTATCACGGGAACATATGGTAGATACCTAGGTTTCTTTAGTNTGATATCGGAGGTTGAATCCCCGGNAATGTATATGGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00207	99033	100627	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000207s00015900.1	PF04043.10	PMEI	25	183	3.40E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	371.233
SRR1783600	control	363.883
SRR1783602	moderate drought stress	259.312
SRR1811619	moderate drought stress	254.526

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	545.417
DRR006520	Root Summer glycyrrhizin high producing strain	537.942
DRR006521	Root Winter glycyrrhizin high producing strain	1834.990
DRR006522	Root Winter glycyrrhizin high producing strain	1780.282
DRR006523	Root Summer glycyrrhizin low producing strain	439.666
DRR006524	Root Summer glycyrrhizin low producing strain	438.571
DRR006525	Leaf Summer glycyrrhizin high producing strain	94.518
DRR006526	Leaf Summer glycyrrhizin high producing strain	93.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	110.454
SRR2868004	Drought Stress (root)	88.417
SRR2967015	Control (root)	120.810

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	266.302
SRR9715740	Leaf	86.268
SRR9715741	Leaf	188.390
SRR9715739	Root	139.458
SRR9715742	Root	161.316
SRR9715743	Root	140.931

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	960.095
SRR8749028	MeJA induced 9h	402.141
SRR8749029	MeJA induced 9h	732.458
SRR8749030	Uninduced	47.450
SRR8749031	Uninduced	35.322
SRR8749032	Uninduced	53.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	244.581
SRR8400027	Control - Root	229.207