Gene detail

Gene detail information of Glyur000207s00015891

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25240.1	5.00E-170	SKU5 similar 1
NR	XP_004499654.1	0	PREDICTED: monocopper oxidase-like protein SKS1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8VXX5\|SKS1_ARATH	0	Monocopper oxidase-like protein SKS1 (Precursor)
trEMBL	tr\|V7BUJ8\|V7BUJ8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20703.1}

Sequence

Transcript Sequence

>Glyur000207s00015891.1
CCGTTTTCTTTTCTCTCTCTCTCTCTCTCCCCTGTAAATCCTAAATAACCCAGAAACTTTCGTATCATAACCATTGCAGTGCACACAGCACACACTTTCAAAACCCATCAANGAGCATGGTTCTCTCTGGCCGTTTCTCTCTGTTACTATCTCTCTTCCTTCACATTGCTCTGTTTTCAAGTCTCTGTTTTGGTGGCGACCCATCAATTTTCACTGAGCTTCACGTCTCCTACTCCACTGTTTCCCCTCTGGGTATTCCTCAACGGGTTATAGCTATCAATGGGGATTTTCCTGGACCGGTCATCAATGTTACAACCAATAACCATGTATCTGTGAATGTGTTCAATGAATTGGACGAAGATCTTCTCATTACATGAGCCTCTGGTGGCTTTGGTCCCTTTGTCATCAACAATAGGGAAATCATCCCAATTCCTTTTGCACAGCCAGATGGAGATATTTTCATTATGATTGGTGACTGGTATAACCAGAACCACACGGCTCTGAGAACAACACTAGATGGTGGAAAAGACCTTGGAATACCAGATGGTGTTCTTATCAATGGGAAGGGACCTTTCCAGTACAACAATACTCTTGTACCTAGTGGCATCCCATATGAAACAATTACTGTTAATCCAGGCAAGACTTATCGAGTTCGTGTCCATAATGTGGGGATTTCAACTTCTTTGAACTTTCGAATTCAAAACCATAATCTATTGCTGGTAGAAACAGAAGGGTATTANACAGTTCAAACAAACTACACCAGTTTTGATATCCATGCTGGCCAGTCTTACTCTTTTCTGGTTACCATGGACCAGAATGCAAGCACAGACTACTATATTGTTGCAAGTGCCAGGTTTGTGAATGAATCATTGTGGCAGAAGGTTACAGGTGTCGCGGTTTTACACTATACAAATTCCAAGGCACCAGTAACTGGTCCTCTTCCTCCCCCACCAGATGATTTTTATGACAAGGGGGCATCAATGAACCAAGCAAGAAGTGTCAGGCAAAACACATCTGCTAGTGGAGCTCGTCCTAACCCACAAGGATCCTTTCGGTATGGCTCCATCAATGTGACTNACACTTACATGTTAAAGGTTATGCCACCAGTGACCATCAATGGCACTACTCGAGCTACCATTAACGGGATCTCGTTCCTTAAGCCCGGNGTTCCATTCCGGCTCGCTGACCAGCATCAATTAAGAGGGATTTATAAGCTTGATTTCCCCAGTAAGCCAATGAACAGAACACNAGTAATTGACAGATCAATCATTAATGCTACCTATAAAGGATTNATCGAGATCGTATTGCAAAACAATGACACCACAGTTCAAAACTTTCACATGGATGGCTACTCCTTCTTTGTAGTTGGGATGGACTATGGTGATTGGACAGAAAATTCTAGGGGCTCTTATAATAAGTGGGACGCAATTTTTCGCAGCACAACTCAGGTTTTTCCGGGAGGATGGACTGCGATCCTTGTATCTCTGGACAATGTTGGATCATGGAACCTAAGAGCTGAAAACCTGGACAGGTGGTATCTAGGCCAAGAAACTTATCTGAGGATTGTCAACCCTGAAGAAACTGGTGACACAGAGATGGCCGCGCCGGATAATGTTCTATTTTGTGGTCCCCTCAGTAACCTTCAGAGGTGGAAGCCACATGGCCATTCTTCTGCAGCTTCTACTATTGGATTTTGCTACCTTTTCACATTGCTTCTGGGACTTCTCATTGTGATTTTCACATCTAGCTAAGCTTCTGTTCTGCTTCTCATTTGGCATTTTTACAGTTCCCCCCAACAAATGTATTTATATAGGTCTGTCATAATGTTTGGTTATTAATTTCTTGGACTAGAGAAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00207	5051	10189	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000207s00015891.1	PF00394.17	Cu-oxidase	1	150	1.50E-41
Glyur000207s00015891.1	PF07731.9	Cu-oxidase_2	236	370	3.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.470
SRR1783600	control	0.497
SRR1783602	moderate drought stress	0.245
SRR1811619	moderate drought stress	0.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.724
DRR006520	Root Summer glycyrrhizin high producing strain	0.713
DRR006521	Root Winter glycyrrhizin high producing strain	0.299
DRR006522	Root Winter glycyrrhizin high producing strain	0.234
DRR006523	Root Summer glycyrrhizin low producing strain	4.071
DRR006524	Root Summer glycyrrhizin low producing strain	4.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.569

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.263
SRR2868004	Drought Stress (root)	2.068
SRR2967015	Control (root)	1.679

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.442
SRR9715740	Leaf	0.237
SRR9715741	Leaf	0.140
SRR9715739	Root	0.099
SRR9715742	Root	1.156
SRR9715743	Root	1.271

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.939
SRR8749028	MeJA induced 9h	13.200
SRR8749029	MeJA induced 9h	16.018
SRR8749030	Uninduced	8.992
SRR8749031	Uninduced	1.195
SRR8749032	Uninduced	2.505

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.280
SRR8400027	Control - Root	0.383