Gene detail

Gene detail information of Glyur000206s00012605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06860.1	5.00E-109	polygalacturonase inhibiting protein 1
NR	XP_003625218.1	0	Polygalacturonase inhibitor [Medicago truncatula]
COG	YP_004775215.1	1.00E-25	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q05091\|PGIP_PYRCO	9.00E-147	Polygalacturonase inhibitor (Precursor)
trEMBL	tr\|A2Q4V2\|A2Q4V2_MEDTR	0	Polygalacturonase inhibitor {ECO:0000313\|EMBL:AES81436.1}

Sequence

Transcript Sequence

>Glyur000206s00012605.1
ATGGGAACCATGTTTGGAGCTATCGGCTTGTGCTTCCTCTCGTTCCTGTTGTTGTTCTCCCCAGTCGCATTGTCGAAGGAGCGGTGCAACCCGCAAGACAAGAAAGTGCTGCTCCGAATCAAGAAGGAGCTCAACAACCCATACCTTCTAGCCTCGTGGAATCCACACGAGGATTGCTGCGAGTGGTATTGTGTCGAGTGTGACCCCAAAACGCACCGCATCANCTCCCTCGTGATGCAATCCTCTGTNCCAGACACCAATCTCTCGGGGCAAATCCCTCCCTCCGTNGGTGACCTCCCTTACCTGGAGACCCTCGAGTTCCACAAGCTTCCAAGGCTCACCGGCCCNATCCAGCCCACCATCGCCAAGCTCACCAAACTCAAGTACCTCTTTATCACCTGGACCAACGTCTCCGGCCCAATACCNCCTTTCTTGGCCCAACTCAAAAACCTCGAGTATCTGCACCTTTCCTTTAACAACCTCACTGGCCCGATACCAAGCTCACTTTCCCAGTTGCCTAACCTCCGGTCCTTGCACTTGGACCGGAACAGGCTNACGGGCCCAATCCCGGACTCGTTTGGGTCGTTCAAGCAGGGCCCAGATCTTATCCTTTCCCACAACCAGCTTTCTGGGCCCATTCCGGCCTCACTGGCCCACTTTGACCCGGAGAGGATAGATCTGTCGAGGAACAAGCTGGAAGGCGATGCCTCCATGCTTTTCGGGGCCAACAAGAGGACGCAGATCCTTGACGTTTCGAGGAACCTGCTGTCCTTTGATTTCTCCAAAGTGGAGTTTCCGAAGAAGAGCTTGATATGGTTGGATCTGAATCACAATAAGATTTACGGTGGGATTCCCGTGGGACTGACCGCAGTGGAAAACNTGCAGCAGTTCAACGTGAGCTATAATCGGCTGTGTGGTGCGATACCGCAGGGTGGAGAATTGCAAAGGTTTGATTCGTATTCGTATTTTCACAACAAGTGCTTGTGTGGGCCCCCACTTCCCAGTTGCAAGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00206	255260	256276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000206s00012605.1	PF08263.7	LRRNT_2	31	68	1.70E-11
Glyur000206s00012605.1	PF12799.2	LRR_4	149	186	7.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.215
SRR1783600	control	7.695
SRR1783602	moderate drought stress	18.296
SRR1811619	moderate drought stress	18.356

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.914
DRR006520	Root Summer glycyrrhizin high producing strain	10.758
DRR006521	Root Winter glycyrrhizin high producing strain	131.850
DRR006522	Root Winter glycyrrhizin high producing strain	127.445
DRR006523	Root Summer glycyrrhizin low producing strain	12.296
DRR006524	Root Summer glycyrrhizin low producing strain	11.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.457
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.638

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.771
SRR2868004	Drought Stress (root)	31.343
SRR2967015	Control (root)	28.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.117
SRR9715740	Leaf	1.966
SRR9715741	Leaf	23.877
SRR9715739	Root	43.721
SRR9715742	Root	58.979
SRR9715743	Root	50.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.665
SRR8749028	MeJA induced 9h	75.453
SRR8749029	MeJA induced 9h	24.206
SRR8749030	Uninduced	173.454
SRR8749031	Uninduced	175.135
SRR8749032	Uninduced	212.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.943
SRR8400027	Control - Root	11.578