Gene detail information of Glyur000206s00012602 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06860.1 | 2.00E-98 | polygalacturonase inhibiting protein 1 |
| NR | XP_003625218.1 | 1.78E-152 | Polygalacturonase inhibitor [Medicago truncatula] |
| COG | YP_004775215.1 | 7.00E-26 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q05091|PGIP_PYRCO | 4.00E-123 | Polygalacturonase inhibitor (Precursor) |
| trEMBL | tr|A2Q4V2|A2Q4V2_MEDTR | 7.00E-153 | Polygalacturonase inhibitor {ECO:0000313|EMBL:AES81436.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 248910 | 252648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012602.1 | PF08263.7 | LRRNT_2 | 30 | 67 | 3.40E-10 |
| Glyur000206s00012602.1 | PF13855.1 | LRR_8 | 122 | 181 | 3.20E-08 |
| Glyur000206s00012602.1 | PF13516.1 | LRR_6 | 445 | 468 | 0.0084 |
| Glyur000206s00012602.1 | PF13516.1 | LRR_6 | 469 | 490 | 0.061 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.000 |
| SRR1783600 | control | 4.687 |
| SRR1783602 | moderate drought stress | 3.412 |
| SRR1811619 | moderate drought stress | 3.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.344 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.708 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.998 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.453 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.075 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.121 |
| SRR2868004 | Drought Stress (root) | 0.021 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.968 |
| SRR9715740 | Leaf | 0.058 |
| SRR9715741 | Leaf | 2.835 |
| SRR9715739 | Root | 3.151 |
| SRR9715742 | Root | 23.916 |
| SRR9715743 | Root | 17.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.104 |
| SRR8749028 | MeJA induced 9h | 0.601 |
| SRR8749029 | MeJA induced 9h | 0.015 |
| SRR8749030 | Uninduced | 0.195 |
| SRR8749031 | Uninduced | 0.115 |
| SRR8749032 | Uninduced | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.833 |
| SRR8400027 | Control - Root | 3.203 |