Gene detail information of Glyur000206s00012601


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G62300.23.00E-60Ribosomal protein S10p/S20e family protein
NRXP_003521199.19.24E-82PREDICTED: 40S ribosomal protein S20-1-like [Glycine max]
COGYP_006860896.13.00E-2130S ribosomal protein S10 [Candidatus Nitrososphaera gargensis Ga9.2]
Swissprottr|P49200|RS201_ARATH2.00E-7640S ribosomal protein S20-1
trEMBLtr|C6SY25|C6SY25_SOYBN2.00E-81Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G32690.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00206246890248705+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015935  small ribosomal subunit


molecular_function

GO:0003723  RNA binding

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000206s00012601.1PF00338.17Ribosomal_S10241204.40E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control580.067
SRR1783600control582.899
SRR1783602moderate drought stress361.725
SRR1811619moderate drought stress360.170

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain457.535
DRR006520Root Summer glycyrrhizin high producing strain453.535
DRR006521Root Winter glycyrrhizin high producing strain268.115
DRR006522Root Winter glycyrrhizin high producing strain260.048
DRR006523Root Summer glycyrrhizin low producing strain367.789
DRR006524Root Summer glycyrrhizin low producing strain367.033
DRR006525Leaf Summer glycyrrhizin high producing strain119.260
DRR006526Leaf Summer glycyrrhizin high producing strain118.582

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)267.429
SRR2868004Drought Stress (root)196.593
SRR2967015Control (root)199.487

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf145.582
SRR9715740Leaf129.755
SRR9715741Leaf129.953
SRR9715739Root286.124
SRR9715742Root216.323
SRR9715743Root227.508

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h385.251
SRR8749028MeJA induced 9h137.438
SRR8749029MeJA induced 9h284.740
SRR8749030Uninduced39.143
SRR8749031Uninduced20.318
SRR8749032Uninduced60.586

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root335.146
SRR8400027Control - Root306.185

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved