Gene detail information of Glyur000206s00012596 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42280.1 | 4.00E-47 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_007162279.1 | 1.42E-119 | hypothetical protein PHAVU_001G138600g [Phaseolus vulgaris] |
| Swissprot | tr|Q66GR3|BH130_ARATH | 1.00E-57 | Transcription factor bHLH130 |
| trEMBL | tr|V7CY23|V7CY23_PHAVU | 5.00E-120 | Uncharacterized protein {ECO:0000313|EMBL:ESW34273.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 208345 | 211280 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012596.1 | PF00010.21 | HLH | 265 | 310 | 4.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.537 |
| SRR1783600 | control | 15.549 |
| SRR1783602 | moderate drought stress | 20.562 |
| SRR1811619 | moderate drought stress | 20.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.517 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.940 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.475 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.610 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.608 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.793 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.149 |
| SRR2868004 | Drought Stress (root) | 26.369 |
| SRR2967015 | Control (root) | 27.632 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.825 |
| SRR9715740 | Leaf | 7.365 |
| SRR9715741 | Leaf | 12.307 |
| SRR9715739 | Root | 1.797 |
| SRR9715742 | Root | 9.898 |
| SRR9715743 | Root | 7.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.686 |
| SRR8749028 | MeJA induced 9h | 18.483 |
| SRR8749029 | MeJA induced 9h | 14.020 |
| SRR8749030 | Uninduced | 17.390 |
| SRR8749031 | Uninduced | 23.018 |
| SRR8749032 | Uninduced | 16.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.915 |
| SRR8400027 | Control - Root | 17.702 |