Gene detail information of Glyur000206s00012594 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12180.1 | 5.00E-33 | Cornichon family protein |
| NR | XP_007162276.1 | 1.83E-72 | hypothetical protein PHAVU_001G138400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C7D7|CNIH1_ARATH | 2.00E-40 | Protein cornichon homolog 1 |
| trEMBL | tr|V7CYB2|V7CYB2_PHAVU | 7.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:ESW34270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 197141 | 201875 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012594.1 | PF03311.9 | Cornichon | 1 | 128 | 4.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.812 |
| SRR1783600 | control | 9.492 |
| SRR1783602 | moderate drought stress | 7.539 |
| SRR1811619 | moderate drought stress | 7.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.276 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.098 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.140 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.338 |
| SRR2868004 | Drought Stress (root) | 23.210 |
| SRR2967015 | Control (root) | 24.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.152 |
| SRR9715740 | Leaf | 8.360 |
| SRR9715741 | Leaf | 8.967 |
| SRR9715739 | Root | 6.527 |
| SRR9715742 | Root | 9.035 |
| SRR9715743 | Root | 10.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.301 |
| SRR8749028 | MeJA induced 9h | 14.862 |
| SRR8749029 | MeJA induced 9h | 9.909 |
| SRR8749030 | Uninduced | 7.855 |
| SRR8749031 | Uninduced | 4.071 |
| SRR8749032 | Uninduced | 6.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.597 |
| SRR8400027 | Control - Root | 21.428 |