Gene detail information of Glyur000206s00012592 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45590.2 | 1.00E-67 | splicing endonuclease 1 |
| NR | XP_004493544.1 | 1.43E-150 | PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like [Cicer arietinum] |
| COG | YP_004457874.1 | 2.00E-08 | intron splicing enzyme subunit alpha [Acidianus hospitalis W1] |
| Swissprot | tr|Q9M1E8|SEN21_ARATH | 1.00E-89 | tRNA-splicing endonuclease subunit Sen2-1 |
| trEMBL | tr|A2Q3E8|A2Q3E8_MEDTR | 6.00E-151 | tRNA-splicing endonuclease subunit Sen2 {ECO:0000313|EMBL:AES81413.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 176217 | 176960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012592.1 | PF02778.9 | tRNA_int_endo_N | 42 | 114 | 2.90E-16 |
| Glyur000206s00012592.1 | PF01974.12 | tRNA_int_endo | 124 | 212 | 3.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.653 |
| SRR1783600 | control | 4.626 |
| SRR1783602 | moderate drought stress | 6.777 |
| SRR1811619 | moderate drought stress | 6.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.503 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.219 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.520 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.163 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.943 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.211 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.018 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.537 |
| SRR2868004 | Drought Stress (root) | 7.820 |
| SRR2967015 | Control (root) | 8.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.225 |
| SRR9715740 | Leaf | 1.461 |
| SRR9715741 | Leaf | 1.844 |
| SRR9715739 | Root | 1.895 |
| SRR9715742 | Root | 4.819 |
| SRR9715743 | Root | 3.449 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.568 |
| SRR8749028 | MeJA induced 9h | 15.691 |
| SRR8749029 | MeJA induced 9h | 18.904 |
| SRR8749030 | Uninduced | 15.221 |
| SRR8749031 | Uninduced | 29.778 |
| SRR8749032 | Uninduced | 28.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.948 |
| SRR8400027 | Control - Root | 5.492 |