Gene detail

Gene detail information of Glyur000206s00012590.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57790.1	1.00E-169	Pectin lyase-like superfamily protein
NR	XP_004493545.1	0	PREDICTED: exo-poly-alpha-D-galacturonosidase-like [Cicer arietinum]
COG	YP_001195450.1	6.00E-75	glycoside hydrolase [Flavobacterium johnsoniae UW101]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	8.00E-18	Probable polygalacturonase
trEMBL	tr\|I1N942\|I1N942_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G32550.1}

Sequence

Transcript Sequence

>Glyur000206s00012590.1
CTTTNTTGAAGCTGCGAAGTGCACAGTGCAAAAGGCAGTCAGAAATCAGCATCGAGAAATGGACAAGCCACCGCTCTTTATCTTCGAAATTATCTTATCCCTCCTCCTCACCCACTCACTTCTCGCCACGTCACACCCTCCAAACCCCATCCCCGTTACGGTTTCCGTCGCCGACTTCGGAGCCGCCGGCGACGGCGTCCGCTACGACACCGCGCCAATCCAGTCGGCCATCGACTCCTGCCCTTCCGGCTGCCCGTGCCAGGTTACCTTTCCGGCGCCGGGGAAGTACCTGACGGCGACCGTGTTCCTGAAGTCCGGCGTGGTGCTGAACGTGGAGGCCGGCGCCACCATCCTGGGAGGCGCGAGGCNGGAAGACTACCCGAAGGAGTCGTGGCGGTGGTACGTGGTGGTGGCGGAGAACGCGACGGACGTGGGAATCGGCGGCGGCGGCGTGGTGGATGGACAGGCAGAGAAGTTCGTGGTGAGACAGGATCCGAGGAAGAACGTGATGGTGAGTTGGAACCACACTGGGGCATGTTTGGGTGACGAGTGCAGGCCCAGGCTCATCGGTTTCATCGGCTGCAACAACGTTAGAGTCTCCAACATTACCCTCAACCAACCTGCTTATTGGTGCTTACACTTGGTACGGAGTGAAAGCATATCCATTCAAGATGTTGCAATTTATGGAGACTTAAATATACCAAACAACGATGGGATTGACATTGAGGACTCAAACAACACGGTAATCACTCGATGCCACATTGATACAGGGGATGATGCAATCTGTCCAAAGACATCCACAGGCCCAGTTTTCAACCTCACAGTCNCCAACTGTTGGATTCGATCCAAATCTTCTGCAATCAAACTTGGCAGTGCTAGTTGGTTTGATTTCAAGCATTTTGTGTTTGACAACATCACCATTGTTGATTCTCATAGAGGAATTGGATTCCANATCCGTGATGGAGGAAATGTGAGCGACATTGTCTTCTCAAACATAAATATCAGCACAAGATACTATGACCCATCATGGTGGGGGAGAGCGGAGCCTATCTATGTCACAACTTGCCCACGAAACTCAACCTCAAAGGAGGCTTCAATCTCAAATATACTTTTCATTAACATCACAGCAGATTCTGAAAATGGCATCTTCCTGTCTGGTTCAAAGAGAGGATTGTTGAGGAATTTGAGATTCATCAACATGAACATCACTTACAGAAGGTTCACCAGTTATGCCGGTGGGTTAGTTGACTATAGGCCAGGGTGCCAAGAATTGGTTAAACACGAGACTGCTGGCATGATGATGGAGCACATTGAAGGTCTTGAGGTTAAGAATGTAGAAATGAGATGGGAAACTAATCAAATAGAGCAGTGGAATAATCCTATGGAGTTCAGGCCTTCTACTGTGAATAACATTCATTTCTCTAACTTTAATTCTGTTCTGTATACAAATAGCAAATCAAGTTAATTACTTGGGATTACACATTTGTTACTTAATCATCAAGGGTACTGGGGGGAAGTTAAAAAGACTGGAGAAGCATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00206	171455	174839	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000206s00012590.1	PF00295.12	Glyco_hydro_28	61	385	2.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.178
SRR1783600	control	1.135
SRR1783602	moderate drought stress	2.455
SRR1811619	moderate drought stress	2.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.908
DRR006520	Root Summer glycyrrhizin high producing strain	2.788
DRR006521	Root Winter glycyrrhizin high producing strain	2.785
DRR006522	Root Winter glycyrrhizin high producing strain	2.940
DRR006523	Root Summer glycyrrhizin low producing strain	3.943
DRR006524	Root Summer glycyrrhizin low producing strain	4.024
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.568
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.605

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.077
SRR2868004	Drought Stress (root)	15.725
SRR2967015	Control (root)	28.207

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.900
SRR9715740	Leaf	9.707
SRR9715741	Leaf	13.168
SRR9715739	Root	0.671
SRR9715742	Root	3.261
SRR9715743	Root	2.242

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.046
SRR8749028	MeJA induced 9h	77.158
SRR8749029	MeJA induced 9h	73.612
SRR8749030	Uninduced	123.132
SRR8749031	Uninduced	163.362
SRR8749032	Uninduced	175.757

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.758
SRR8400027	Control - Root	3.494