Gene detail information of Glyur000206s00012584 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G51200.4 | 4.00E-43 | A20/AN1-like zinc finger family protein |
| NR | AFK43974.1 | 8.98E-108 | unknown [Lotus japonicus] |
| Swissprot | tr|A3BDI8|SAP8_ORYSJ | 1.00E-74 | Zinc finger A20 and AN1 domain-containing stress-associated protein 8 |
| trEMBL | tr|I3SUN2|I3SUN2_LOTJA | 3.00E-108 | Uncharacterized protein {ECO:0000313|EMBL:AFK43974.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 124404 | 124925 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012584.1 | PF01754.11 | zf-A20 | 15 | 39 | 3.50E-10 |
| Glyur000206s00012584.1 | PF01428.11 | zf-AN1 | 114 | 152 | 2.00E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.182 |
| SRR1783600 | control | 68.704 |
| SRR1783602 | moderate drought stress | 158.652 |
| SRR1811619 | moderate drought stress | 164.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 227.082 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 222.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 443.709 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 454.205 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 346.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 345.941 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.044 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 87.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 189.281 |
| SRR2868004 | Drought Stress (root) | 247.784 |
| SRR2967015 | Control (root) | 276.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 154.981 |
| SRR9715740 | Leaf | 159.763 |
| SRR9715741 | Leaf | 181.709 |
| SRR9715739 | Root | 328.148 |
| SRR9715742 | Root | 185.455 |
| SRR9715743 | Root | 211.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 121.218 |
| SRR8749028 | MeJA induced 9h | 103.489 |
| SRR8749029 | MeJA induced 9h | 116.767 |
| SRR8749030 | Uninduced | 109.643 |
| SRR8749031 | Uninduced | 65.942 |
| SRR8749032 | Uninduced | 131.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 176.589 |
| SRR8400027 | Control - Root | 166.931 |