Gene detail

Gene detail information of Glyur000206s00012580.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G44200.1	1.00E-87	NIMA (never in mitosis, gene A)-related 6
NR	XP_006604372.1	1.21E-140	PREDICTED: serine/threonine-protein kinase Nek6-like [Glycine max]
COG	YP_007163221.1	7.00E-23	serine/threonine protein kinase with pentapeptide repeats [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q9LT35\|NEK6_ARATH	1.00E-103	Serine/threonine-protein kinase Nek6
trEMBL	tr\|I1N937\|I1N937_SOYBN	4.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G32470.1}

Sequence

Transcript Sequence

>Glyur000206s00012580.1
ATGGAGACAGATAACGGTGACATGAGGTCTAAGAAGATGGAAGACTATGAAGTGATAGAGCAAATTGGTAGGGGAGCATTTGGCTCTGCTTTTCTCGTTCTTCACAAGTCTGAGAAAAAGAGGCAAGTCAATTACACTTTAGCTTTTCAACTTCAATTGTATGTGCTGAAAAAGATTCGCTTGGCTAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGATTATAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGAGGATCATTTTTTCCCGAGGAGAAGGTCTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAACCGTGTAATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAATATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTGCTTCCTCGGTTGTTGGAACTCCGAATTACATGTGTCCCGAGCTCCTTGCTGACATACCATATGGCTATAAATCTGATATGTGGTCTCTTGGTAAGGATCATGGATGCCTTATTCTAATTGACAAAGCCATATGATATCTGACCTCGTGTAAGAATGATATCTCTTTGTATGTAAAGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCAGCATTCCGTGCTCCGGACATGGCAGGACTCATCAATAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAAATCATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGGCCAACAGCAGCCGAATTGTTAAGGCATCCACATTTACAACCNTATGTTCTTCGCTGTCAGAATGCATCATCTAATGTTCTTCCAGTATATCCTATAGTTAACTCAAAGGAGAAAACAAGAAGATCTTATAAATCTTGTGGTGGCAAGGACCATAGGGACAAAGAAACAGGATTATTAAATCGTTTGGANCGGGTTCATCCAATTGAGGGAAATGGAGATGTAGAGACGGGCAATCTTCCTAACGATGGCGAGGTAACAATCTCAACTAGTGCAGAAGACAACCTAGACACCAAGATGGTTGATTTTACCAGCTACACAGTGGAATCTTCTACTAGTATCAGCGGCTCGAAAGATGGGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAGGACTTTAAAAGCAGACCAGCTAGGGAAACAGCAAACAACGGGATNGCTTCAAAGAGTGCACACGATTCTGTGCNTGAAGAACAAGGATTTGCTGCTCCAGAACATTTTCACAAATCAGAAGGAGTTGACNCGANGAATGCAGTGACCCCAGAAGTTGAAGATACGTCTTCCGGCGAAGGCTTCAGGAGGGAAGATGCCAAACTTGAGGACTCCAGGAAATCAACAACTTCAAGTGCAGGCAGTAGCATCACTGATAAAGATAATTCCATTAATGAGGAAAGGTCATCACTAGTTATGCATCCTAATAATGATGAACATGACCATGAATCTGGAAACTACTCAAAGAAAAGTGAAAACACTGATGCCTTTACGGAAGGCTCACATATGAAGTGCTTGTCACCAGAGAGTAACAACAGTAATACACTTCCAGTTAAGGATGATGACATAGCAAAAAAGCACAACATTATTTGCTCCACACAGAAAGATGATGGTAATGCAGTTGGGGTTGATCAGACACAGAGTGGCATTTCATTGAGTGTAGTTACTACTACTGCAACTGATCATAGTGATGAAACAATGAAGAGTGTGTTGGATAGTCCTTGCCAGCAAAGAGCTGATGCATTGGAATCTCTGCTTGAGTTGTGTGCTCAGCTACTTAAGCAAGATAAACTGGAAGAGCTTGCTGGGGTGCTAAGACCATTTGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTCACAAAGAGCCTCATATCTGCCCAAAAATTTAACCCTGAATCCTAGTTTGTGAGAGGTTCACTTCTCAGCCATTAATTAATTTTTACATTATTATTGTAAGAAATGTGTATTTCAAATGTCACATGATGAGTTTGTTCCCTTTGAGATTGTTGCTTGGTGTACGATTGGATAATGGAAAAATAGCATGCCACATATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00206	108010	114000	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000206s00012580.1	PF00069.20	Pkinase	16	214	1.20E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.932
SRR1783600	control	13.101
SRR1783602	moderate drought stress	12.727
SRR1811619	moderate drought stress	12.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.307
DRR006520	Root Summer glycyrrhizin high producing strain	18.361
DRR006521	Root Winter glycyrrhizin high producing strain	2.985
DRR006522	Root Winter glycyrrhizin high producing strain	2.932
DRR006523	Root Summer glycyrrhizin low producing strain	15.595
DRR006524	Root Summer glycyrrhizin low producing strain	15.680
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.978
SRR2868004	Drought Stress (root)	34.023
SRR2967015	Control (root)	28.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.925
SRR9715740	Leaf	14.462
SRR9715741	Leaf	18.816
SRR9715739	Root	1.447
SRR9715742	Root	11.049
SRR9715743	Root	10.113

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.930
SRR8749028	MeJA induced 9h	4.732
SRR8749029	MeJA induced 9h	1.578
SRR8749030	Uninduced	1.135
SRR8749031	Uninduced	0.277
SRR8749032	Uninduced	0.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.436
SRR8400027	Control - Root	32.730