Gene detail information of Glyur000206s00012575 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57670.1 | 2.00E-110 | C2H2-type zinc finger family protein |
| NR | XP_003521192.1 | 0 | PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] |
| Swissprot | tr|Q9SVY1|ZWIP2_ARATH | 4.00E-151 | Zinc finger protein WIP2 |
| trEMBL | tr|K7KEY8|K7KEY8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G29610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 83300 | 86423 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012575.1 | PF13894.1 | zf-C2H2_4 | 244 | 263 | 0.0046 |
| Glyur000206s00012575.1 | PF00096.21 | zf-C2H2 | 328 | 350 | 0.038 |
| Glyur000206s00012575.1 | PF13894.1 | zf-C2H2_4 | 356 | 373 | 1.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.913 |
| SRR1783600 | control | 13.951 |
| SRR1783602 | moderate drought stress | 14.811 |
| SRR1811619 | moderate drought stress | 14.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.571 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.446 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.187 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.861 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.599 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.905 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.490 |
| SRR2868004 | Drought Stress (root) | 3.698 |
| SRR2967015 | Control (root) | 6.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.631 |
| SRR9715740 | Leaf | 1.232 |
| SRR9715741 | Leaf | 1.764 |
| SRR9715739 | Root | 4.240 |
| SRR9715742 | Root | 5.288 |
| SRR9715743 | Root | 4.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.208 |
| SRR8749028 | MeJA induced 9h | 0.142 |
| SRR8749029 | MeJA induced 9h | 0.049 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.172 |
| SRR8400027 | Control - Root | 11.334 |