Gene detail information of Glyur000206s00012564 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52630.1 | 9.00E-176 | mitochondrial RNAediting factor 1 |
| NR | XP_004493520.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630-like [Cicer arietinum] |
| Swissprot | tr|Q9LTF4|PP429_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g52630 |
| trEMBL | tr|A2Q3L7|A2Q3L7_MEDTR | 0 | Tetratricopeptide-like helical {ECO:0000313|EMBL:ABN08217.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00206 | 14012 | 15478 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000206s00012564.1 | PF01535.15 | PPR | 49 | 75 | 0.0067 |
| Glyur000206s00012564.1 | PF01535.15 | PPR | 77 | 101 | 0.003 |
| Glyur000206s00012564.1 | PF01535.15 | PPR | 151 | 174 | 0.028 |
| Glyur000206s00012564.1 | PF13812.1 | PPR_3 | 224 | 251 | 0.21 |
| Glyur000206s00012564.1 | PF01535.15 | PPR | 256 | 280 | 0.0029 |
| Glyur000206s00012564.1 | PF14432.1 | DYW_deaminase | 361 | 477 | 1.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.259 |
| SRR1783600 | control | 13.247 |
| SRR1783602 | moderate drought stress | 9.074 |
| SRR1811619 | moderate drought stress | 8.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.333 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.667 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.053 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.395 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.104 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.739 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.472 |
| SRR2868004 | Drought Stress (root) | 50.317 |
| SRR2967015 | Control (root) | 47.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.548 |
| SRR9715740 | Leaf | 2.569 |
| SRR9715741 | Leaf | 2.304 |
| SRR9715739 | Root | 12.673 |
| SRR9715742 | Root | 14.136 |
| SRR9715743 | Root | 12.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.561 |
| SRR8749028 | MeJA induced 9h | 3.952 |
| SRR8749029 | MeJA induced 9h | 3.598 |
| SRR8749030 | Uninduced | 2.316 |
| SRR8749031 | Uninduced | 0.842 |
| SRR8749032 | Uninduced | 1.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.605 |
| SRR8400027 | Control - Root | 12.892 |