Gene detail

Gene detail information of Glyur000206s00012562.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain
NR	XP_004493518.1	PREDICTED: zinc finger CCCH domain-containing protein 30-like [Cicer arietinum]
Swissprot	tr\|P93755\|C3H30_ARATH	Zinc finger CCCH domain-containing protein 30
trEMBL	tr\|A2Q3L5\|A2Q3L5_MEDTR	Zinc finger, CCCH-type {ECO:0000313\|EMBL:ABN08215.1}

Sequence

Transcript Sequence

>Glyur000206s00012562.1
ATGTGCTGTGAGTTGGAGCGGTTAAAGCCTGCACCGTCTCCATCTCTATCTCCTATTTTGACACGCTCTTCTCAAGTACCTAGAAACCACGACACGATGATGAATCACTTAACTGTTGGCACTGATGATTCTTTTGCTAGCTTGCTTGAGCTTGCAGCCAATAATGACGTTGAAGGGTTCAAACGATTGATCGAGTGTGATCCTTCCTCTGTGGATGAGGCTGGACTTTGGTATGGCCGTCGAAAGGGATCGAATCAGATGGTCAATGAGCAAAGGACACCCTTGATGGTTGCTGCCACCTATGGCAGCGTTGATGTTATGAAGCTGATTCTTTCTCTATCTGATGTTGACATCAACCGCCCTTGTGGCCTTGACAAGAGCACTGCCCTTCACTGTGCTGCATCGGGTGGGGCTGAGAATGCTGTTGATGCTGTGAAACTGCTTCTTGCAGCTGGGGCTGACCCCAATTCTGTGGATGCCAATGGCCACCGTCCCTTAGATGTTATTGTTTTCCCTCCCAAGCTTGATTGTGTAAAGAACAGTCTTGAAGAGCTTCTTCAAACAGATGATTCTAGTGCTGTTGCCACGTGTACTAATCTTAGGGTGATCACACCCTCATTTAATGCATATTCACCACCTTTATCAGCTTCNCCTGAGAACGGGTCTCCTCCTCCACCGGATTTCCAGCTGAAGTTGAAGTCAAATGATGTACTTGTTTCTTCTGCAGCATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCGACTGATGAGTTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCGCGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCGGGGGAGAATGCCCGAAGAAGGGACCCGAGGAAGTATCATTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGTCGCCGAGGGGATATGTGTGAATATGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCGGCACAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGGGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTGTATGTTTCAACCGGTTCTGCTGTTCCCTCTCCTCGATCAAGCACGTCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCGATGTCTGTCATGTCCCCTTCACCATTCACACCACCCATGTCACCTTCTGCCAATGGCATTTCCCACTCTTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTGCATCTTCCAGGAAGTAATCTCCAGTCTAGCCGTTTGAGATCCTCACTCAATGCTAGAGACATGCCTGTGGATGATTTTGACTTGTTATCTGAATATGATCAACAGCAACAGCTCCTTAATGAGTTATCATGCCTCTCTCCACAGCCTATGAATTCTAATACTCTAAACCGCTCTGGTCGAATGAAACCACTGACCCCATCGAATCTTGATGATCTCTTTTCTGCCGAGAGTTCCTCTCCTCGATATGCTGATCCAACACTGACTTCGACTGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAGCAAAGCTTGTTGGCACCTGTGAATACAAATTTTTCTTCTAAAAATGTTGAGCATCCTTTATTGCAGGCTTCTTATGGGGTTCAGGCGTCAGGAAGAATGTCTCCTCGAAATGTGGAGCCTATTTCTCCAATGGGTTCTAGGATTTCCATGCTGGCTCAACGCGAGAAGCAGCAACAGTTTCGCAGCCTGAGCTTCCGGGAATATGGCTCTAACTCTGCTGCTGCAGCAGCTGCTGCCTCAGCCAACTCTTGGTCCAAATGGGAGTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCGGACGAAGTTGGTAAGCTCCGTAGATCATCTTCATTTGAGCTTGGGAACAATGGCGAGGAGCCCGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTACTGTCTCAAGTGCTGCAGCTGCTGGGTCCTCCAGTGAGGGACCAAACATGAGCACACAAATGGAGTCTGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00206	5925	8138	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000206s00012562.1	PF12796.2	Ank_2	118	179	2.00E-07
Glyur000206s00012562.1	PF00642.19	zf-CCCH	312	332	7.60E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.539
SRR1783600	control	66.727
SRR1783602	moderate drought stress	55.613
SRR1811619	moderate drought stress	58.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.854
DRR006520	Root Summer glycyrrhizin high producing strain	66.859
DRR006521	Root Winter glycyrrhizin high producing strain	39.254
DRR006522	Root Winter glycyrrhizin high producing strain	38.040
DRR006523	Root Summer glycyrrhizin low producing strain	78.686
DRR006524	Root Summer glycyrrhizin low producing strain	77.693
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.209

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.168
SRR2868004	Drought Stress (root)	55.649
SRR2967015	Control (root)	61.664

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.745
SRR9715740	Leaf	30.861
SRR9715741	Leaf	31.703
SRR9715739	Root	75.404
SRR9715742	Root	83.382
SRR9715743	Root	78.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.650
SRR8749028	MeJA induced 9h	30.057
SRR8749029	MeJA induced 9h	21.823
SRR8749030	Uninduced	18.262
SRR8749031	Uninduced	6.270
SRR8749032	Uninduced	7.138

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.755
SRR8400027	Control - Root	41.143