Gene detail information of Glyur000205s00012961 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23120.1 | 1.00E-160 | photosystem II stability/assembly factor, chloroplast (HCF136) |
| NR | XP_004505712.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: photosystem II stability/assembly factor HCF136, chloroplastic-like [Cicer arietinum] |
| COG | NP_440411.1 | 3.00E-96 | hypothetical protein slr2034 [Synechocystis sp. PCC 6803] |
| Swissprot | tr|O82660|P2SAF_ARATH | 0 | Photosystem II stability/assembly factor HCF136, chloroplastic (Precursor) |
| trEMBL | tr|G7JPH8|G7JPH8_MEDTR | 0 | Photosystem II stability/assembly factor HCF136 {ECO:0000313|EMBL:AES89445.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00205 | 236281 | 241914 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000205s00012961.1 | PF14870.1 | PSII_BNR | 76 | 395 | 1.50E-122 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.024 |
| SRR1783600 | control | 0.977 |
| SRR1783602 | moderate drought stress | 0.816 |
| SRR1811619 | moderate drought stress | 0.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.529 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.483 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.341 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.312 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 82.801 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.645 |
| SRR2868004 | Drought Stress (root) | 8.362 |
| SRR2967015 | Control (root) | 8.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 116.827 |
| SRR9715740 | Leaf | 164.766 |
| SRR9715741 | Leaf | 97.330 |
| SRR9715739 | Root | 1.401 |
| SRR9715742 | Root | 2.182 |
| SRR9715743 | Root | 1.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.905 |
| SRR8749028 | MeJA induced 9h | 8.731 |
| SRR8749029 | MeJA induced 9h | 5.634 |
| SRR8749030 | Uninduced | 4.795 |
| SRR8749031 | Uninduced | 3.462 |
| SRR8749032 | Uninduced | 5.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.503 |
| SRR8400027 | Control - Root | 10.770 |