Gene detail

Gene detail information of Glyur000205s00012952

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08260.1	6.00E-137	serine carboxypeptidase-like 35
NR	XP_003540633.1	0	PREDICTED: serine carboxypeptidase-like 35-like [Glycine max]
COG	YP_002430787.1	1.00E-25	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q9LEY1\|SCP35_ARATH	0	Serine carboxypeptidase-like 35 (Precursor)
trEMBL	tr\|I1LPI7\|I1LPI7_SOYBN	0	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}

Sequence

Transcript Sequence

>Glyur000205s00012952.1
CTCTCCACCATGGTTCATTTATAGGTAACACACAGCCCTCACTCACTAGTCACTACCATTTGGTCTTTAATTTGCTGCTTAAGAAGAGTATCCAATAAAGCAACACTCATCAGGAAGGAAGCTTCATTTCATATGCTCCGAATTCCAATGGCCACTTTCTGGGCCTCACTCTTTTATTACTGCCTCCTCACCACCACCACCGCGGTTGTAGTCTCGGCCGCGAGAGAATATTCCGGCGAAGAGGCGGCGGCGCGGCAACGGGAGGCGGATAGGGTGAAGAACTTGCCGGGACAGCCGCCGGTGAAATTCGAACACTATGCGGGTTATGTCAAGCTAGGAGGACCGAACCAACAACAGCACAAGGCATTGTTCTACTGGTTCTTCGAAGCTCAACAAGCTCCCTCACAAAAGCCTCTTGTGCTCTGGCTTAACGGAGGACCTGGTTGCTCGTCCATTGGCTATGGAGCTGCACGAGAGCTTGGTCCATTTCTTGTTGAAGACAAAGAGCGCCTCAAACTGAACAAATACTCGTGGAACAGGGTTGCAAATATCATATTCTTGGAGTCACCAGTTGGTGTTGGCTTTTCTTACACTAACAATTCCAAAGATTTACATGAGCTTGGGGATCGAGTTTCTGCTAGTGATAACTATGCCTTCTTGGTTGGTTGGTTCAAAAGGTTCCCTAGCTTCAAATCCCATGACTTTTATATTGCTGGAGAGAGCTATGCAGGACATTATGTTCCACAGCTTGCTGAGCTCATCTATGAAAGAAACAAAGATGCCAAAAGGGGCTCTTACATAAATCTCAAGGGATTCATGGTGGGAAATGGTGTGATGCATGATCTTACAGATATAAATGGCTTAATTGATTATGCTTGGAGCCATGCCATCATCTCAGACCAAGTATATCATGGGATAGTCAAAGAATGCGACTTTGGCAAAGAAAACCAAACAAGGGCTTGCGATTTGCATGTTGCAAGGTTATTAGAAGNTTACTCTGAGATTGATATATATAGCATTTATTCACCCATTTGCCTCAACAAATATCAAAGAAGAGTTTCAGCCAAACTAGTCGTTGCTCCTCATTTTCTCACAAGACATGACCTTTGGCATACGCTACCATCAGGATACGATCCCTGTACAGAGGATTATTTGAGCAAATATTTCAATAATCCGGATGTTCAGAAGGCCCTACATGCCAATATCACCAACTTGTCATATCCCTATAGCCTTTGCAGTGGNGACACAGATGGTAGAGTTCCAGTGACATCAACAAGATACAGCATAAACAAGATGGGGTTGAAAGTAAAGAAAGGGTGGAGAGCTTGGTATGAGGAGCATCAAGTGGGAGGGTGGATAGAGGTGTACGAGGGTGGCCTCACATTTGCCACCATTAGAGGTGCTGGCCACCAAGTTCCCATCTTTGCACCTCAACAATCCCTTTCTCTCTTCACCCATTTCCTCTCTTCTCNTTCCCTCCCATCTTCTCGCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00205	181713	189511	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000205s00012952.1	PF00450.17	Peptidase_S10	52	369	8.20E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.151
SRR1783600	control	37.535
SRR1783602	moderate drought stress	35.174
SRR1811619	moderate drought stress	33.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.990
DRR006520	Root Summer glycyrrhizin high producing strain	25.117
DRR006521	Root Winter glycyrrhizin high producing strain	8.810
DRR006522	Root Winter glycyrrhizin high producing strain	9.042
DRR006523	Root Summer glycyrrhizin low producing strain	20.985
DRR006524	Root Summer glycyrrhizin low producing strain	20.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.819
SRR2868004	Drought Stress (root)	31.404
SRR2967015	Control (root)	38.129

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.967
SRR9715740	Leaf	18.285
SRR9715741	Leaf	15.354
SRR9715739	Root	26.440
SRR9715742	Root	55.817
SRR9715743	Root	45.580

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.847
SRR8749028	MeJA induced 9h	0.335
SRR8749029	MeJA induced 9h	0.662
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.017

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	110.151
SRR8400027	Control - Root	107.237