Gene detail

Gene detail information of Glyur000205s00012950

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02820.1	3.00E-47	zinc knuckle (CCHC-type) family protein
NR	XP_003607257.1	7.31E-160	TIMELESS-interacting protein [Medicago truncatula]
trEMBL	tr\|I1LIR6\|I1LIR6_SOYBN	3.00E-143	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G10610.1}

Sequence

Transcript Sequence

>Glyur000205s00012950.1
CTTGTATGTTTCCCGCCATTTCCCGCGCGAGGAAGAAGAGTGAATAAAATCCCAATCGAATTCACAGAAGTGAGCGTGAATTGGCGATTGCAGAGAGAATCAGAGAAATGGAAGGAACAGGAACGGGAACTGGAACTGGAACAGCAACAGGGTGTTACAAGTGTGGCAGACCAGGTCACTGGTCACGCGACTGCCCTTTCTCCGCCCCAAATTCTACTACTACTACTAACCCTAACAGCACCACCAGTAACGGCGCCACTCCCTCTGCTTCGTCTTCTTTCAAGACTTCTGGGCCCAGATCCGCCGCCGAGAAGCCCAAAAAGCTGCCCCGAACACGGCCCAAACTCACTCCCGATCTCCTTCTCTCCGACGACGGCCTCGGTTACGTCCTTCGCTATTTCCCTCGCGCCTTCAAAAACCACGGTCGCCGCCACGAGGTTCGTGATTTGGGTAACCTGCTTCAGTTATACTCCGAGTGGCACTCTCGCTTGATCCCTTATTACTCTTTCAACCAATTCATTCACAAAGTCGAGAAAGTTGCTGCCACCCGCCGTGTCAAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAATGGTGGGGATCCAACAAAATTGCGCGAACCACCAGTCGTGCACGACATTCCAGCTGATGAACAAGAAGATGGGGAAGCAAGTCATCAAGANAGAGACATGTTTGCAGAACCCGAAAATGTTAATGACATTCAAGAAGACATACTTAATGATATATATGACAAAGCTACTGAAGAACNTTCTCAGCCCACGCACAATGTGATTAGTGTGAGTACGGATCCCAAAAGTAGTGCAGTTGAAAAGACTTCNAATGAAGTTCCAAATAATGGAGCCAGCCAGTCCAGCAATGCTGAGATAACAGCAGAGCAGAGAGCTCGTATGGAAGCAAATAGGTTGAAGGCGCTAGAAAGGCGTGCAGCTCGAGCTGGCTCATCACAGACCTCCTAGCTTCGATCTTAATTGTAAATGAAAACTGTCATTATCTCTCACTACTGGTTTAGTTGACTTTAAGTCCCATGAATTGAATAGTTGATTTTTGACTGTCTGGCGAATATGGATGCTTTATATGATGCTTGTNATTATGAAGATTGAATAGAAGTGAATGGATTGGTGTTAGATGGTTAGCTTCATGTTTGAGATTTTGAGATGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00205	163517	167105	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006974 cellular response to DNA damage stimulus

GO:0007049 cell cycle

GO:0048478 replication fork protection

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000205s00012950.1	PF00098.18	zf-CCHC	15	30	9.20E-08
Glyur000205s00012950.1	PF07962.7	Swi3	79	160	1.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.873
SRR1783600	control	15.962
SRR1783602	moderate drought stress	4.593
SRR1811619	moderate drought stress	4.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.819
DRR006520	Root Summer glycyrrhizin high producing strain	8.917
DRR006521	Root Winter glycyrrhizin high producing strain	4.713
DRR006522	Root Winter glycyrrhizin high producing strain	4.402
DRR006523	Root Summer glycyrrhizin low producing strain	4.657
DRR006524	Root Summer glycyrrhizin low producing strain	4.394
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.548

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.229
SRR2868004	Drought Stress (root)	6.259
SRR2967015	Control (root)	5.916

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.425
SRR9715740	Leaf	0.694
SRR9715741	Leaf	0.904
SRR9715739	Root	2.785
SRR9715742	Root	2.626
SRR9715743	Root	2.843

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.699
SRR8749028	MeJA induced 9h	13.966
SRR8749029	MeJA induced 9h	14.919
SRR8749030	Uninduced	1.168
SRR8749031	Uninduced	0.545
SRR8749032	Uninduced	0.895

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.480
SRR8400027	Control - Root	7.846