Gene detail

Gene detail information of Glyur000205s00012948

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23210.3	6.00E-95	serine carboxypeptidase-like 34
NR	XP_006590795.1	0	PREDICTED: serine carboxypeptidase-like 34-like [Glycine max]
COG	YP_002430787.1	3.00E-14	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q0WPR4\|SCP34_ARATH	2.00E-113	Serine carboxypeptidase-like 34 (Precursor)
trEMBL	tr\|I1LPI4\|I1LPI4_SOYBN	0	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}

Sequence

Transcript Sequence

>Glyur000205s00012948.1
ATGGGTTTGTGTTCAGTTATTACTTCCAATTATCTGCTTCCTCTCCATGTTGTGCTTCTTCTTGTTATTTTCTCTTCGGCNAAACAAGCCTTAGGTGTGTCAAACTCTGAGCTTAGCGGGGAGGTATTGGCAGAACAAGAAGCAGACAGAGTTTATGGACTACCAGGGCAGCCTCCTGTGAAGTTCAATCAGTATGCTGGCCCCGGTTGTTCTTCAATTGGTTATGGAGAAGCAGAGGAGCTTGGGCCCTTCTTTCCCCAGAACAGCAGCCAACCAAAGCTAAAGTTGAACCCTTATTCTTGGAATAAAGCTGCAAATCTCCTGTTTCTGGAATCCCCTGTGGGAGTGGGATTCTCCTACACCAATACTAGCAGTGATATAATTGAGCTCGGTGACACTATTACTGCTCAGGATTCACACACCTTTATCATCAAATGGTTTAGAAGATTTCCACAATTCAGATCACGCGAGTTCTACATTGCAGGCGAAAGCTATGCAGGGCACTATGTTCCACAACTTTCTGAGCTGATTTTCGATAATAATCACAATCCTTCCAAGGAAGACTACATTAACTTCAAAGGGTTCATGATTGGAAATGCACTATTGGACGATGAAACAGATCAAAAGGGTATGATAGATTATGCGTGGGACCATGCTGTGATATCTGATGGCTTATATCACAACATCACAACCAAATGCAACTTCAGCATTCCAATTAAAAACCAAACATATGAATGCAGCGAGGAACTTAACAAGTACTACGATTTGTATAAGCTTATTGACATGTATAGCATGTACAATCCCATCGATAATATCACATTCTGGGATGAGGCACCACAGTCCATGCTTCCTGTCATCAAGAAGCTTGTTGCTGCTGGGATTCGTATATGGGTTTACAGTGGAGACACAGATGGAAGAATTCCTGTAACTGCAACAAGATACACACTAAGGAAAATGGGGCTCGATATAGTTGAAGATTGGACTCCCTGGTATACCACCCAGGAGGTAGGAGGATGGACCATTGAATACAAGGGGCTCACTTTTGTGACCATAAGAGGNGCTGGTCATCAGGTTCCTACTTTCGCTCCCAAGCAAGCTCTTCANCTACTTCGACACTTCTTAGTCAATAAGAAATTACCTCAGCACCCAATTTAATGAGTTTTTCTTTTTAATTTATCATTTTTATGTTTTGCTCCCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00205	140190	147883	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000205s00012948.1	PF00450.17	Peptidase_S10	67	269	1.30E-71
Glyur000205s00012948.1	PF00450.17	Peptidase_S10	276	375	3.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.452
SRR1783600	control	1.375
SRR1783602	moderate drought stress	0.536
SRR1811619	moderate drought stress	0.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.007
DRR006520	Root Summer glycyrrhizin high producing strain	4.937
DRR006521	Root Winter glycyrrhizin high producing strain	0.301
DRR006522	Root Winter glycyrrhizin high producing strain	0.159
DRR006523	Root Summer glycyrrhizin low producing strain	0.875
DRR006524	Root Summer glycyrrhizin low producing strain	0.858
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.295

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.090
SRR2868004	Drought Stress (root)	49.614
SRR2967015	Control (root)	33.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.385
SRR9715740	Leaf	4.421
SRR9715741	Leaf	7.169
SRR9715739	Root	0.363
SRR9715742	Root	2.195
SRR9715743	Root	1.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.247
SRR8749028	MeJA induced 9h	1.388
SRR8749029	MeJA induced 9h	1.585
SRR8749030	Uninduced	0.346
SRR8749031	Uninduced	1.412
SRR8749032	Uninduced	0.125

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.652
SRR8400027	Control - Root	13.973