Gene detail information of Glyur000205s00012929 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | ABN09044.1 | 1.26E-13 | Ribonuclease H [Medicago truncatula] |
| trEMBL | tr|A2Q624|A2Q624_MEDTR | 5.00E-14 | Ribonuclease H {ECO:0000313|EMBL:ABN09044.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00205 | 59074 | 61063 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000205s00012929.1 | PF13456.1 | RVT_3 | 107 | 150 | 2.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.240 |
| SRR1783600 | control | 3.960 |
| SRR1783602 | moderate drought stress | 5.307 |
| SRR1811619 | moderate drought stress | 4.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.536 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.340 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.120 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.343 |
| SRR2868004 | Drought Stress (root) | 0.552 |
| SRR2967015 | Control (root) | 0.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.562 |
| SRR9715740 | Leaf | 6.045 |
| SRR9715741 | Leaf | 4.707 |
| SRR9715739 | Root | 1.198 |
| SRR9715742 | Root | 0.760 |
| SRR9715743 | Root | 1.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.480 |
| SRR8749028 | MeJA induced 9h | 0.242 |
| SRR8749029 | MeJA induced 9h | 0.304 |
| SRR8749030 | Uninduced | 0.286 |
| SRR8749031 | Uninduced | 0.063 |
| SRR8749032 | Uninduced | 0.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.159 |
| SRR8400027 | Control - Root | 11.021 |