Gene detail

Gene detail information of Glyur000205s00012928.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19860.2	7.00E-64	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_003531414.1	6.70E-147	PREDICTED: transcription factor bHLH121-like [Glycine max]
Swissprot	tr\|Q9LT23\|BH121_ARATH	3.00E-88	Transcription factor bHLH121
trEMBL	tr\|I1KTH2\|I1KTH2_SOYBN	2.00E-147	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15740.2}

Sequence

Transcript Sequence

>Glyur000205s00012928.1
CCCCTTCTTCAATCCTTCGTCACTCATTGGAAATCGATTCCAGTCCAAAAGAGATAACAGGGGAAACAGAACGACAGCACGATTCCGTCGTTTCCTTTGATCCCCAAAACGACCAGGCATGTAAGCATCGTTTTCACTTTACCTTTGTTTCGTTGAATGAAGGAGTGCATCGTGTTGGATAGAACAGAACAGAATAGAACAGAACGGGAATGAGCAAAAATTGAAGATAAGCATCGACCATAGATAAACGAGGTCTGAAGTTGAACCAATGGATTGTNCTGCAAGAAAGTCACAAAAGGCCGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAGTTTGTAGAACTGGGCAACATTTTAGACCCTGATAGGCCCAAAAATGATAAAGCAACCATTTTAGGCGATACAGTTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATACTGTGCTAAATGAAGAATCTCGTGAGTTGTCNCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTGCTCTTAAATCGGATATTGAGAATCTTAATAATCAGTATCAGCAGCAACTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCACCATCGTATCCGTATCCAGTGCCAATGCCAGTACCTCCTGGTCCGATTCCCATGCAGCCATACCCCTTCTTTGCTAATCAACATCCTGCAGTCATCCCTAACCCGTGTTCAACATTTGTTCCTTATTTAGCCCCCAACACACTTGTTGAACAGCAATCCACCCAGTTTGTATCCCCGCCTCTTCATCCAGGTAGTCGGTCCCACGTGTCAGGAAAACAAGACTCCAAAAACAAATCATCCCGGGAGAGCAAGGCTGATAGAAATGAGGATTCTAATGATGACTTATCATCTGGACAAAGAAAATCTAGCAAGTTGTCACGGAAGGAAAGCAGTTTCACAGAAGGTAGTTCGTTAGGTAGGTGTTCTTCTTCATCTCATAGCGTTCAGGATAGCTCGTCAAGTAGTGTAGTCGGGAGCAGAAAGGCTAACGAATGAGAGAAAAGAACATAATTTTAGACAAGTGCTCATAGTCATGCCTTTTGAAGCCACTGTGAAGTTTTTCATTGTGCTTCTGCTGCAACTATCTGGAGGTACAAGTCTCTTCTGTTCTTATCCTTAAAAAAAAAAAAAAAACGAAAGTCACTTTTGTTCTCTCTTCCTGACTAGGAATTTATTCTAAGTAGGTTTAAGTTGTTCTATGTAATCTTATCATAAACTTCTCCTTGTGAGGGAAAAGCTTCGCAGGTTCAATTGTTTTATGTTCCTATTTCTTGTAAAAAGTTGAAATTGCAGCTGGAAAATCTCCATATTGAGACCAGTGTGGCTAATCTGTAGGTTTGTAAATCCCTTCATCACAAACTCTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00205	50190	54040	-

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000205s00012928.1	PF00010.21	HLH	7	55	3.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.514
SRR1783600	control	10.575
SRR1783602	moderate drought stress	13.210
SRR1811619	moderate drought stress	13.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.762
DRR006520	Root Summer glycyrrhizin high producing strain	9.400
DRR006521	Root Winter glycyrrhizin high producing strain	23.858
DRR006522	Root Winter glycyrrhizin high producing strain	23.237
DRR006523	Root Summer glycyrrhizin low producing strain	16.644
DRR006524	Root Summer glycyrrhizin low producing strain	16.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.599

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.517
SRR2868004	Drought Stress (root)	17.916
SRR2967015	Control (root)	22.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.967
SRR9715740	Leaf	19.222
SRR9715741	Leaf	16.580
SRR9715739	Root	1.690
SRR9715742	Root	9.275
SRR9715743	Root	7.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.650
SRR8749028	MeJA induced 9h	28.199
SRR8749029	MeJA induced 9h	28.138
SRR8749030	Uninduced	22.732
SRR8749031	Uninduced	70.859
SRR8749032	Uninduced	28.684

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.914
SRR8400027	Control - Root	10.436