Gene detail

Gene detail information of Glyur000204s00012425

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47780.1	0	ABC2 homolog 6
NR	XP_004508760.1	0	PREDICTED: ABC transporter A family member 7-like isoform X2 [Cicer arietinum]
COG	YP_007201548.1	4.00E-39	multidrug ABC transporter ATPase [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9STT5\|AB7A_ARATH	0	ABC transporter A family member 7
trEMBL	tr\|G7JQX2\|G7JQX2_MEDTR	0	ABC transporter A family protein {ECO:0000313\|EMBL:AES91239.2}

Sequence

Transcript Sequence

>Glyur000204s00012425.1
TTGTATGGAATTGGGTTCTGCCNTGCCAATGCCAATGCCATTGCCATGACACGTCGTCATGTTTTATTGGTTTTGAAGAAACGGAACGTGAAGACAAACATTCGGCTGATTCTGTTCCCTGTGATCCTGTGCCTCTTGCTGTTTCTCCTCCAACGTTTAATCGACAGTCAACTTGAAAAGGCGTCTAAGGATGCAGCAAACGCCGGCACCGGTATCATTCCCAACCCACCCGAATGGCCTCCTCTCTTGCAACTTCCCGATGAGTCCCCCTCATGCCGCAGGAGAACCGCCACGCCCACCTGTTCTTTTACTTTGCTCTTCACCGCCGATAATCACTCCTTTGCACAAAGTGTGTCTGATAATTTGTTCCCAACTGCCTTCACTGAAAATCACTCTGATGATGATGATGATATCATGGCTACTTTGGCAACAATTGTCCTGGGAACTGGAACATTGCCTGAGCAAACCAATTTTAATGAACCTGCTTTCTCTTCTGGCCTTCTTTATTATCTACAAACTCAGTGCCCGCGGGGTGCTGGAGTCTCCCTTCCCTTCCAGGACCGAGGTATGGAATATCCTTGTATTGTAATGGCAATTGAGCTATATAAAATTGATGAAACAGATAACCCAGAACCAAAAGGACAGATCAGTGAGATATTTTCAGCTTTTGATTTTCTAAATTCAAATGGGAATAGATTTAATGTCACCATATGGTACAACCCAACCGGCAACAATGGCACTGGTTCCAGTGCTATTCGATTGGTGCGGATTCCTCGTTCCGTAAATCTGATATCGAATGCCTACCTGCAGTTTCTGCGTGGACCCAATACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCAATTAGGCTTGAGATAGCTTCTCTTCTGGGCGGTCTGTTCTTTACATGGGTCGTCCTGCAACTTTTTCCTGTTGCTCTGACATCACTGGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTCCTTGCCATATCTGTGATCTACATGTTGTGTTTTGTGCTATTTGGTTCAGTCTTAGGATTTAAATTCTTTACGTCGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGATGGCTTCCTTTTTTTCGAATGTTAAGACTGCTGCAGTAACTGCATATATAGGCGTCTTCGGAACCGGGCTATTAGCCGGCTCTCTTTTCAANTCTTTTCTTCAATCATCTTTTCCAAGACGGTGGATCATTTTTATGGAGTTGTATCCAGGGTTTGCTTTATATCGTGGGTTATTTGAGTTTTCAGAATATGCCAGTGGGATCACTCCGGGGACTGATGGTATGCGGTGGCAGGATCTAAGTGATAGCGCCAATGGCATGAAAGAGGTCTTAAATATCATGTTTGCTGAGTGGATAGTACTGCTTTTTGCTGCTTATTACATCGATCAAGTATTGTCATCCGGAAAAAGTCCTCTTTTCTTCTTGAAAGGATATCAGAAAAAGCCTCTTTCATCACTCCGGAAGCCCAGTATCCAAAGGCAGGGGTCAAAAGTTTTGGCTCAGATGGAGAAACCTGATGTCATCCAAGAGGTGANTTTTACATATATTGAATCAATGTACTCAAGGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACCATTAATCATGCAATTGTATGTGATGACCTTAAAAAAATCTATCCGGGGATGGACGGAAATCCAGAGAAATTTGCAGTGAGAGGATTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGTATAGCTTTTGTTGAAGGCCAGGACATAATAACTCATATGAATGAAATATATACTAGCATTGGAGGAAGACTTAACTATTTAGCTTCCAATGTATTGCTACAGGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAGCAAGCTGGAAAATACAGCGGAGGGATGAAGAGGAGGCTAAGTGTTGCAATTTCATTGATTGGGGATCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGGTTAGACCCTGCTTCAAGAAATTGCTTATGGAATGTTGTTAAGCTTGCAAAACGGGATCGTGCAATCATTCTGACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGAATATTTCTGAANGGCAGATATGGAGGAACTTATGTGTTCACAATTACAACATCTTCGGGTCATGAAAAGGATGTGGAGAACATGGTACAGCAGTTCAGTCCAAATGCCAAAAAGATATACCATCTGTCTGGTACCCAGAAATTTGAGCTGCCAAAAGAGGAGGTTAAAATAGCAGATGTATTCCAAGCCGTTGAAGCTGCGAAGAGAAAGTACACTGTTTTTGCATGGGGTGTGGCTGACACTACATTGGAAGATGTCTTCATTAAGGTAGCACGTGGGGCTCAGGCATTTGATACCTTGTCATAATTTGTATATGCATGATCCACTGCTAGTCTATGCAGGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	249064	258306	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012425.1	PF12698.2	ABC2_membrane_3	228	503	1.40E-12
Glyur000204s00012425.1	PF00005.22	ABC_tran	611	730	7.40E-16
Glyur000204s00012425.2	PF12698.2	ABC2_membrane_3	228	503	1.40E-12
Glyur000204s00012425.2	PF00005.22	ABC_tran	611	671	4.80E-09
Glyur000204s00012425.2	PF13304.1	AAA_21	690	747	5.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.184
SRR1783600	control	2.060
SRR1783602	moderate drought stress	2.276
SRR1811619	moderate drought stress	1.867

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.901
DRR006520	Root Summer glycyrrhizin high producing strain	3.205
DRR006521	Root Winter glycyrrhizin high producing strain	1.886
DRR006522	Root Winter glycyrrhizin high producing strain	2.321
DRR006523	Root Summer glycyrrhizin low producing strain	3.258
DRR006524	Root Summer glycyrrhizin low producing strain	3.266
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.622
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.998
SRR2868004	Drought Stress (root)	3.582
SRR2967015	Control (root)	4.270

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.118
SRR9715740	Leaf	3.035
SRR9715741	Leaf	2.041
SRR9715739	Root	2.093
SRR9715742	Root	3.381
SRR9715743	Root	3.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.066
SRR8749028	MeJA induced 9h	1.023
SRR8749029	MeJA induced 9h	0.796
SRR8749030	Uninduced	0.994
SRR8749031	Uninduced	0.671
SRR8749032	Uninduced	1.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.731
SRR8400027	Control - Root	6.006