Gene detail

Gene detail information of Glyur000204s00012424

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74690.1	3.00E-99	IQ-domain 31
NR	XP_003609033.1	0	IQ domain-containing protein [Medicago truncatula]
Swissprot	tr\|Q8L4D8\|IQD31_ARATH	4.00E-117	Protein IQ-DOMAIN 31
trEMBL	tr\|B7FLN4\|B7FLN4_MEDTR	0	IQ calmodulin-binding motif protein {ECO:0000313\|EMBL:AES91230.1}

Sequence

Transcript Sequence

>Glyur000204s00012424.1
ATGCAATCTATATACTATTCCCGCCAGCGTGGCACCCATCCCGTGCACCACGCAAACCCACTTCACCGAATGCCACGCGTTCCATCTTCAGCTCCGCGATCCACCTCGCATAATCAACGGTGCACATTCACCAGAACGCGCTTCCGCTCGAATGGTAGATTTGAGGTGAAGAGGTTTTGCATTGGTCAGGTCCTGGTCTCACATGGGGAAATCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAGTCATCCAAATCAAATATCTCAAGAGGAAGAGAGGAGTTGTTACGTCCAAGGTGTCAGAAACTGGTTTGGCTTTAGAGCCAACCTCCAATACTATTGCCAGACATGAGGAAGATCTGGAGCTGGAGAATAAAGAAGCAGAAAATATATTACCTGGAAATCAAGAAATTGACACAATAGGACCTGTTCATCAAGATGCACCACTTGATCCAGAGAAAATGAGGCAGGAGGAAGCAGCTACAAAGGCGCAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTGAAAGGCATAATAAGGCTGCAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGTTACTTTATGCTGTATGTATGGAATTGTCAAATTACAAGCACTTGTTCGTGGAGAAAGAGTTAGAAAGTCTGATGTTGGATTTCAAATTCAGGAGAAGTACAATCTATTGAAGCCTCGGGATGACAAACTTGTCAAGCCAATTGCTATATCTGCAAAAATCATGAAGCTGTCAGCAAATGCTTTCATCCGTAAGCTCTTTGCTACATCAACTACAATAATGGCCTTGCGTTTGCAATATGTTCGTGGTGATCCAAATTCAGTTTTAAGTTGGTTGGAATGCTGGTCAGCATCTCACTTTTGGAAGCCAGTTCCCCAACCCAAGAAAATTCGGGATACTAAGACTCAGAAAAAGCAGGGTAATATTTCAATTGGAGATGCTCAAATGAGCAAGTCAAAACGTACCCACAGGAAGCTTCCTACCGCAACTTTTGACCCAGTCCCAGCCCAAGCAAATCCTGAGTCTGAGAAACCAAAACGAAACATAAGGAAAATTCCAAGCCAACCCTCAGATCCTGTGCTAGAAAATCCACAATATGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGAATGCTGTTCTGCCAGAAGTTGAATCTGAGACCCCAAAGCCACATTTGGAAAAGGAAACAGTTACCTCAAATGTTGGCGTTTCAGAACAAGGGGTCATTAGTTCTAATGAAACGGTCAAGAAGGAAGAAACATTAACCGTTTACAGTGAGCCGGATAAAGGAATTACTCCTAGAGATTCAGTTAGTAAAGAGGTGTGTGANGCTCCAAGCAGTTATCAAGTGACTGTGGAATCAAAGCCCTTGACAGAGATTACGAGTAAAGATAAAAACATTTCTGATGATGAAGTGAAAAATGAGCCCATAGATTTACCAGAGACTATTTGTAAAGATGAAAATTATCCCTTGACAAATGGAGATTTGAGTCACAAGGAAGATCAAACAGGTAATGAAAACCAGAAACCAACCCGAAAAGCCTCAATTGGAGCAAAGCAGGAACGTGCAGAGAATGGTTTACAGAATAGTCCGACATTACCGAGTTATATGGCAGCAACTGAATCCGCAAAGGCAAAGTTGAGGGCACAAGGATCCCCAAGATTTGGACAAGATGGAAGTGAGACAAAAAACAATGCCCGGCGACATTCTCTGCCATCTTCAACTAACAGCAAAGTCAGTTCGCATTCACCTAGGACACACAGACCAGTTCAAGCAGGTGGCAAAGGGGGACACAGAAGTGACAAAACTGTATCATCTTCTAGAGATGGGAATGTTAAAGAGAGTTGGAAAGTGAAAGTTCTGGAGGAGAAAATCGCCCCTACAAAAGAGAATTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	240413	247745	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012424.1	PF00612.22	IQ	161	180	1.70E-05
Glyur000204s00012424.1	PF00612.22	IQ	183	200	0.0029
Glyur000204s00012424.1	PF13178.1	DUF4005	518	624	9.70E-17
Glyur000204s00012424.2	PF00612.22	IQ	161	180	1.60E-05
Glyur000204s00012424.2	PF00612.22	IQ	183	200	0.0028
Glyur000204s00012424.2	PF13178.1	DUF4005	518	624	9.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.476
SRR1783600	control	52.740
SRR1783602	moderate drought stress	45.591
SRR1811619	moderate drought stress	45.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.789
DRR006520	Root Summer glycyrrhizin high producing strain	58.289
DRR006521	Root Winter glycyrrhizin high producing strain	15.158
DRR006522	Root Winter glycyrrhizin high producing strain	14.802
DRR006523	Root Summer glycyrrhizin low producing strain	53.816
DRR006524	Root Summer glycyrrhizin low producing strain	53.422
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	109.933
SRR2868004	Drought Stress (root)	77.576
SRR2967015	Control (root)	82.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	45.518
SRR9715740	Leaf	32.379
SRR9715741	Leaf	27.609
SRR9715739	Root	3.499
SRR9715742	Root	27.618
SRR9715743	Root	21.771

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.150
SRR8749028	MeJA induced 9h	60.457
SRR8749029	MeJA induced 9h	49.273
SRR8749030	Uninduced	12.204
SRR8749031	Uninduced	6.164
SRR8749032	Uninduced	7.086

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	93.063
SRR8400027	Control - Root	91.916