Gene detail

Gene detail information of Glyur000204s00012416

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27140.1	6.00E-11	HSP20-like chaperones superfamily protein
NR	XP_004508772.1	1.27E-99	PREDICTED: uncharacterized protein LOC101491080 [Cicer arietinum]
COG	NP_967867.1	2.00E-07	small heat shock protein [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q38806\|HSP22_ARATH	2.00E-08	22.0 kDa heat shock protein (Precursor)
trEMBL	tr\|I1JZS1\|I1JZS1_SOYBN	3.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01330.1}

Sequence

Transcript Sequence

>Glyur000204s00012416.1
CGCTGAAAGACAGGAGGCCTGGAAATAAGCAAGGAATAGACTGCTTTTTGCACATGTTACAAAACAAAACTACATAGGTCAGTCACCACAGCCCAAAGTTTCACGTTGCTCAAGTTTGGAATAAGAATGTTGAAGCATGCAAAGCAAGCCAACCATCGAGAGCTTGATCATCAGGGAAACATGAAAGGGCACGCAATTACATATTTTATCTAACGTTGTCCTATACGAGCAAATATATAGCCTCCACATGTTGCATGCAAATTATAACACTGTAACCTTTCTTCAACACCAATTAATTTCTTGCATTCTTAATTGAGNTTCATAGTAGTTGTTAACTTGTTCGTCCTCAATGGCCAGTGCTAGAGGTACTACAAGGGTTGGAGTAAGACCAAGCGCAAGAACAGCCCCAGTTGTTGAAGAGATTGTACCTGCTTCTGGATGGACNGAGGACTCTGCGGGCCATTATCTTTTAGTGGATCTTCCTGAGTTCAGGAAGGAAGAGGTGAAGCTTCAGGTTGATAGCAATNGGCATATTATTGTAAAAGGAGAAAGGCAAGCAAGTGAGCAGAAACGTGTTCATTTTCATCTGACTTTTCCGGTGCCGGTGGATTCCGATANGGAGAAGTTAGCCGGGAAATTTGATTGTGGAATCCTTTACGTGACTATTCCCAAGCAAATAACACAAGAGAACAAAGAAAGTGAGACTGAGAAAGCTGAAAATAGCCATGTTAATGAAAGAGCAGAAGAAAATCATGATAGCCATGAAACCAATGCTGATAGTGAGGGGAGAGATCATACTCAACATGTCAGCCATACAGAGCAGGCAGAAATAAGAAATGAAAATGAAAATGAGCACATAAGGGAATTTTCTGAACAAGCAANAAGGAAGTGGGAGCAAGAACCCATTTTAAGAAGTGCAGTGGAGGTTTTGAAGAACAACAAAGGGATTGTTATAACCGCTGTTATAGCCTTTTCCCTGGGGCTGTATATATCTCGTAAATTTCAATTCTCAGAAGCAGCACCATAAGTGAAGTGAAGTCCTTTGACCTGCATCCATTCATGTATATCTCCCCCCCCCCCCTTCATATCACGTGCCTTTTATGTGCATCTCTAGAAGAAAGTATCACGCAGATATTCAAATCTTAATAATAATATCTCTGTTTTATCCTTCTTCCTTTCCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	194490	195916	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012416.1	PF00011.16	HSP20	32	116	2.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.114
SRR1783600	control	1.309
SRR1783602	moderate drought stress	1.796
SRR1811619	moderate drought stress	1.914

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.747
DRR006520	Root Summer glycyrrhizin high producing strain	2.959
DRR006521	Root Winter glycyrrhizin high producing strain	0.673
DRR006522	Root Winter glycyrrhizin high producing strain	0.501
DRR006523	Root Summer glycyrrhizin low producing strain	5.462
DRR006524	Root Summer glycyrrhizin low producing strain	5.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.128

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.355
SRR2868004	Drought Stress (root)	3.970
SRR2967015	Control (root)	3.631

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.253
SRR9715740	Leaf	0.752
SRR9715741	Leaf	1.293
SRR9715739	Root	0.303
SRR9715742	Root	1.551
SRR9715743	Root	1.839

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.166
SRR8749028	MeJA induced 9h	0.527
SRR8749029	MeJA induced 9h	1.661
SRR8749030	Uninduced	0.376
SRR8749031	Uninduced	0.769
SRR8749032	Uninduced	0.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.813
SRR8400027	Control - Root	2.202