Gene detail information of Glyur000204s00012413 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74720.1 | 0 | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein |
| NR | XP_004508771.1 | 0 | PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q7XA06|SYT3_ARATH | 5.00E-08 | Synaptotagmin-3 |
| trEMBL | tr|V7CDG9|V7CDG9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00204 | 188476 | 191568 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000204s00012413.1 | PF00168.25 | C2 | 16 | 105 | 1.60E-18 |
| Glyur000204s00012413.1 | PF00168.25 | C2 | 307 | 382 | 0.016 |
| Glyur000204s00012413.1 | PF00168.25 | C2 | 463 | 550 | 0.033 |
| Glyur000204s00012413.1 | PF00168.25 | C2 | 620 | 696 | 8.20E-15 |
| Glyur000204s00012413.1 | PF08372.5 | PRT_C | 875 | 1030 | 2.70E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.090 |
| SRR1783600 | control | 8.180 |
| SRR1783602 | moderate drought stress | 8.009 |
| SRR1811619 | moderate drought stress | 8.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.088 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.048 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.929 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.682 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.558 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.011 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.987 |
| SRR2868004 | Drought Stress (root) | 7.420 |
| SRR2967015 | Control (root) | 8.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.871 |
| SRR9715740 | Leaf | 8.058 |
| SRR9715741 | Leaf | 5.461 |
| SRR9715739 | Root | 26.235 |
| SRR9715742 | Root | 17.745 |
| SRR9715743 | Root | 18.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.089 |
| SRR8749028 | MeJA induced 9h | 4.096 |
| SRR8749029 | MeJA induced 9h | 2.800 |
| SRR8749030 | Uninduced | 0.634 |
| SRR8749031 | Uninduced | 0.553 |
| SRR8749032 | Uninduced | 1.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.701 |
| SRR8400027 | Control - Root | 14.805 |