Gene detail

Gene detail information of Glyur000204s00012412

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01280.1	9.00E-37	voltage dependent anion channel 1
NR	XP_004508774.1	1.83E-137	PREDICTED: mitochondrial outer membrane protein porin of 34 kDa-like [Cicer arietinum]
Swissprot	tr\|Q9SRH5\|VDAC1_ARATH	1.00E-57	Mitochondrial outer membrane protein porin 1
trEMBL	tr\|K7KML2\|K7KML2_SOYBN	1.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01350.2}

Sequence

Transcript Sequence

>Glyur000204s00012412.1
GTCCAGGTTAGTCTACAAGCAGTATCAGTGTTTGTCTNTGGCTAGCTTAAGTTTTACTCTTTGTTTACTTCACTTGTCGTCATCTTTAGGACATGTTGTTTATGGAAATTTCGTTTTCTACAGTTTGCAATCAAGTGAATCATTTTGTACAAGAGGAAACTTCCTTTGCCCTTCTATCCCTACCCTCCCAATAAATTATCATGCCAACAAATCATCACAAAAAGGGTAAATCACAAACAATAGTTTTTTGATTTCTAAGCATTCATCTTAGCAAAATGAGCAGCTGTCCGGGGGTATATTTTGATATTGGGAAGAAGGCCAAAGGTGTTCTTCACAAGGACTATGCTAAGCTATCACCAATTCACTTTCACTACCAAATCGTGGACTGGAATTTAGACCTCTCTTGTCAAGTAGAAGAAATTGTACCTGGATTCAGGAGCCGTTTCAAATGTACTATACCAGATTCCGGCAAGGTGGAACTACAATACTTGAATAACTACATTGGGATTACTGGAGGCATTGGATTATTAGGAAACCTAGAAGGAGGATATGACCCTGTTGTAAACTTCTCTGGCCTTATAGGAACAAGCGTTCTGTCCCTGGGAGCCAATGTAGCTTTTGACATCCCAACAAGAACAATCCACAAGCTGAATGCTGGCTTCAGCTTTAGCAGTGCCTTCCTTGCTGCTTCCTTGACCTTGCATGACAGCTTTGACACTCTAAAAGCCACCTGTTATCATGAAGTGAACCCCTTAACCAAGACAGCCATTGCAGCAGAGATGAAGTATAGCTTGTCACTCCAGGAAACTGGTGTCACCATTGGTGCTCAGCATGCATTTTTTCCACAAACATTGGTAAAGGCTCGATTTGACACCTCTGGCAAAGCAGGTGCTCTTATTCAACAAGGGNTATGGCAGAAATTTTTTATGACTATGACTGGAGAAATGGATTTTGGGGCCATAAATAAGGTTCCCAAGTTTGGAATCTCCATGGCTCTNAGACCCTAGTCTATTATGCCCACGAGATAAGCTTCGGTCCCCACTTGACCCCACTTGAGAGGTTTTTGGATGTAAGGAGACTTTCAAACAATGATGCAAACTGGATAAAAACTTCAATATTCAACAGTATGAGTACCATGTCTAGTTCTGCTCATACACAATTTTTATGAATAAAATTATCATAGTGCTAGTATTAGATATCTATTTATCACTTCTACCTGTTTATGTTTAAAATGACTCCTGCTTATTCATATAGAAAATGAGCCTCTGAAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	184478	186807	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0005741 mitochondrial outer membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012412.1	PF01459.17	Porin_3	37	236	6.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.995
SRR1783600	control	22.054
SRR1783602	moderate drought stress	17.039
SRR1811619	moderate drought stress	17.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.435
DRR006520	Root Summer glycyrrhizin high producing strain	5.614
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.699
DRR006524	Root Summer glycyrrhizin low producing strain	2.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.110

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.080
SRR2868004	Drought Stress (root)	0.390
SRR2967015	Control (root)	0.417

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.712
SRR9715740	Leaf	14.088
SRR9715741	Leaf	6.628
SRR9715739	Root	4.118
SRR9715742	Root	5.264
SRR9715743	Root	5.905

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.849
SRR8749028	MeJA induced 9h	0.919
SRR8749029	MeJA induced 9h	2.464
SRR8749030	Uninduced	0.158
SRR8749031	Uninduced	0.164
SRR8749032	Uninduced	0.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.998
SRR8400027	Control - Root	1.401