Gene detail

Gene detail information of Glyur000204s00012411

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62740.1	6.00E-154	SPFH/Band 7/PHB domain-containing membrane-associated protein family
NR	XP_010100924.1	0	Hypersensitive-induced response protein 1 [Morus notabilis]
COG	YP_007201322.1	8.00E-103	membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9FM19\|HIR1_ARATH	0	Hypersensitive-induced response protein 1
trEMBL	tr\|W9S324\|W9S324_9ROSA	0	Hypersensitive-induced response protein 1 {ECO:0000313\|EMBL:EXB86236.1}

Sequence

Transcript Sequence

>Glyur000204s00012411.1
ATGTTAGCACTTGGTGGGTTGGGAAAAATTGCCTTTGTGGATCAGCATAATCTTATTGGTACAGTTGATGATGTGCCAATANATTTTGAAGTATTGCAGTTAAAGCAAATGGGGAATCTTTTTTGTTGCGTGCAAGTTGACCAATCTACGGTGGCTATAAAAGAAAGATTTGGACGATTTGAAGAGGTGCTTCAGCCAGGATGCCATTGCATGCCATGGTTTCTTGGGAAACGAATTTCTGGTCATCTCTCTCTTCGGCTACAGCAATTGGATATTCGATGTGAGACCAAGACAAAGGATAATGTCTTTGTCAATGTTGTTGCTTCTATTCAATATCGTGCCTTGGCAGACAAGGCTAATGATGCTTTTTACAAACTTAGCAACACAAGGAGCCAAATTCAAGCCTATGTTTTTGATGTAATCAGGGCAAGCGTTCCAAAACTCAACTTGGATGATGCTTTTGAGCAGAAAAATGAAATTGCAAAAGCTGTGGAAGAAGAACTTGAGAAGGCTATGTCAGCTTATGGATATGAAATTGTTCAAACACTGATTGTTGATATAGAGCCAGATGAGCATGTGAAGCGGGCTATGAATGAAATCAATGCAGCTGCAAGATTGAGGGTGGCAGCTAATGAGAAGGCGGAGGCAGAGAAGATCTTGCAAATTAAGCGAGCTGAGGGCGAGGCCGAGTCTAAATATCTCTCTGGGCTGGGTATTGCTCGCCAACGTCAAGCCATTGTGGATGGCTTGAGAGATAGTGTGCTTGGATTCTCAGTTAATGTACCTGGGACAACTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCAATATTTTGACACTATGAAAGAAATTGGCGCTGCTTCCAAGTCTTCTGCTGTGTTCATTCCCCATGGACCTGGTGCTGTTCGTGATGTAGCCAGCCAAATTCGTGATGGACTTCTTCAGGGTTCTCGTCAGTAGTTTCTAATCCTCCTATGTCATATCTGGTTTGTATGGCAGTATGGCGATGCTATAATGCTTGTGGTTTATTTCTGTGCAGTGTGTTATGTGATTTTGTATCAGAGTAAACCACCAAATTGGTCCTCCAAATATTATGGCATCACTATATCCGTCTTGCAAAAGATATTCTGTCATTAAATTAACCCTTCAAAGATCTAGAACATCATCACATTCGTTCTNAAGGAAAATGGTGACTCAAAAATAAAAAATTGGTAACCGTTTTGTATCTTTGAGGGATTTATTTGATGACAAAAATCTCTGGAGGATGAATGTGTTAAACATGCTAACCTTTAGAGGAGGATTTAAAGGACTCACTCTTGTTTTANACTTTCAATTTGTAAGTCAAATTGTAGATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	181477	184061	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012411.1	PF01145.20	Band_7	45	218	2.00E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.759
SRR1783600	control	4.812
SRR1783602	moderate drought stress	4.341
SRR1811619	moderate drought stress	4.499

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.164
DRR006520	Root Summer glycyrrhizin high producing strain	4.946
DRR006521	Root Winter glycyrrhizin high producing strain	5.913
DRR006522	Root Winter glycyrrhizin high producing strain	5.603
DRR006523	Root Summer glycyrrhizin low producing strain	6.703
DRR006524	Root Summer glycyrrhizin low producing strain	6.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.727
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.471
SRR2868004	Drought Stress (root)	68.627
SRR2967015	Control (root)	79.492

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	47.947
SRR9715740	Leaf	54.607
SRR9715741	Leaf	51.457
SRR9715739	Root	5.688
SRR9715742	Root	6.374
SRR9715743	Root	6.403

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.948
SRR8749028	MeJA induced 9h	12.839
SRR8749029	MeJA induced 9h	8.595
SRR8749030	Uninduced	10.326
SRR8749031	Uninduced	9.969
SRR8749032	Uninduced	8.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.490
SRR8400027	Control - Root	19.661