Gene detail

Gene detail information of Glyur000204s00012408.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01470.1	5.00E-36	homeobox 1
NR	XP_003524980.1	1.61E-134	PREDICTED: homeobox-leucine zipper protein HAT5-like [Glycine max]
Swissprot	tr\|Q02283\|HAT5_ARATH	1.00E-41	Homeobox-leucine zipper protein HAT5
trEMBL	tr\|I1JZS9\|I1JZS9_SOYBN	6.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01390.1}

Sequence

Transcript Sequence

>Glyur000204s00012408.1
AAAAATCAGAAGCAAAGGTTGGTAGGAAAAAACCAACAAAACCATGAACAATTACACAACAGTGATTAACAAAAAGGGCATGAAAGTAAGTAAACACTCCCTTCTCAGTTACAGGGGTTAATATAAACACAAGTGAGAGTCTGTTCTTCTTCGAACTCCAGAGAGAAAAGATAGCCACTGGTTCTGTCCCCGTCTCTGTGTCCGTGTCCAAAACTCTCTTTGATTCTCTCTCTCTTTCTCTGTGTGACGCTCTTCCACACTTGTTTTGGAATTGGGTCTCTTCCCCTTGTTGCTCTTCTGAGTGATGGGTATGCCCTGCCGTTGTTCCCACACCTCCCACATCACCGAGATCATCATCACCAGCTTCTTTCGCCACAAGTCTTAGATTAGATCCTTCTCGATTTTTCTTTAAACTTGCATCGCGATGGCACCTTAAAGAAGAACGTAACGTGGTGGTAGAAAGTTTAGCTTTTTGATATATGGCGGGTGGGAAGGTCTTAACCGGTACTGGTCCTGCTCCAAATGTTTCGAATATCAGTATTTTGCTTCAGAATCAAACTACTGGTCGTGGCAATTCTGAACAACCTCTTGATTCTCTCTTCCTTCCTACGACCCCTGCTCCTTTCTTCGCTGGTTCAAGATCCATGATGAGTTTCGAAGATGTTCGAGGAGGGAATAAGGGGTGTAGTAACAGTAGGTCCTTCTTCCGCGCATTCGATCTGGATGAGAGCTGTGACGACGGAATGGATGAGTACTTCCATCAACCGGAGAAGAAGCGGCGCCTCTCGGCAGAGCAGGTTCAGTTTCTGGAGAAAAGCTTCGAGGTGGAGAACAAGCTGGAACCGGATAGGAAAACCAAGATAGCCAAGGACCTTGGCTTGCAGCCACGGCAAGTGGCCATTTGGTTTCAGAACCGCCGAGCAAGGTGGAAAACAAAACAGCTGGAGAAGGATTACGATTCTCTTCATGCCAGCTTTGAGTCTCTTAAGACCAACTATGACAACCTTCTCAAGGAGAAAGACAGGTTAAAAGCTGAGGTAANTTCAATTCCATCACTTAACGCCACTCCAACTGTGGAAAGCCTTACTGAAAAGGTACTTACAAGGGAGAAACAAGGGGGAAAGTTGTTTAACATTCAACAGGGTGAGNTAAGTGAAACAAACGGATTGCAGGAACAGGAACCACTGCCCCAGAAGCGTTTGCTTGATAATACTTCAGTTTCGGAGGGTGAAGGATCCAAGGTCTCTGTTGGGGGTTGTAATAAACAGGAAGATATCAGTTCAGGCTGCAGGAGTGATGACATTATGGATTCTGACAGCAGCCCGCGTTACAGGGANGGAGGAGTACACTCTGCTTCAGCACTGCTAGAGACAGGTGATAATTCCTCCTATGTATTCGAACCCGACCAATCCGACCTGTCACAGGATGAGGAAGACAACCTCAGCAGGACCCTGTTGCATCCGTACCTCTTCCCAAAACTTGGTGATGATCATGATGTCAATTACTCCGACCCGCCTGAAAGTTCGTCTAGTTTTGGATTCCCGGAGGAAGACGATCATGCCCTTTGGCCCTGGTCTTTCTAGATCTATATCATTATCTTCTTCCCTATACAAATACATACTATGTNTCTCTCTTTTATGTTTAGTATTTGCCCTTTTTGTGAAGACCTTTAAAAGTGAGTGACTTTTGTTGAGTGCGTAGTAACTAATAAGTAATAATTGAGAGGTAGCAATGGCACCCTGCCTCCCCCTCAAATGGCTGTGGCTCTTTTAGGATAGAAAAATGGGGCTGTTTTTGCCCCATTTTGTTGTATTTGTAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	165857	168412	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012408.1	PF00046.24	Homeobox	98	151	1.00E-16
Glyur000204s00012408.1	PF02183.13	HALZ	153	190	7.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	65.808
SRR1783600	control	65.747
SRR1783602	moderate drought stress	95.640
SRR1811619	moderate drought stress	94.418

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	68.443
DRR006520	Root Summer glycyrrhizin high producing strain	67.679
DRR006521	Root Winter glycyrrhizin high producing strain	358.982
DRR006522	Root Winter glycyrrhizin high producing strain	348.577
DRR006523	Root Summer glycyrrhizin low producing strain	64.512
DRR006524	Root Summer glycyrrhizin low producing strain	64.325
DRR006525	Leaf Summer glycyrrhizin high producing strain	48.586
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.781

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	212.316
SRR2868004	Drought Stress (root)	349.686
SRR2967015	Control (root)	278.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	98.874
SRR9715740	Leaf	151.119
SRR9715741	Leaf	114.990
SRR9715739	Root	167.924
SRR9715742	Root	176.791
SRR9715743	Root	176.534

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.212
SRR8749028	MeJA induced 9h	136.326
SRR8749029	MeJA induced 9h	53.335
SRR8749030	Uninduced	135.764
SRR8749031	Uninduced	24.492
SRR8749032	Uninduced	31.160

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	239.016
SRR8400027	Control - Root	172.633