Gene detail information of Glyur000204s00012407 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62720.1 | 6.00E-64 | Integral membrane HPP family protein |
| NR | BAI63586.1 | 3.81E-118 | HPP domain containing protein [Lotus japonicus] |
| COG | YP_864395.1 | 2.00E-10 | HPP family protein [Magnetococcus marinus MC-1] |
| trEMBL | tr|D2KTV2|D2KTV2_LOTJA | 1.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:AFK44493.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00204 | 154659 | 157187 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000204s00012407.1 | PF04982.8 | HPP | 152 | 258 | 6.90E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.857 |
| SRR1783600 | control | 3.860 |
| SRR1783602 | moderate drought stress | 6.642 |
| SRR1811619 | moderate drought stress | 6.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.679 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.594 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.264 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.737 |
| SRR2868004 | Drought Stress (root) | 10.505 |
| SRR2967015 | Control (root) | 12.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 88.058 |
| SRR9715740 | Leaf | 61.258 |
| SRR9715741 | Leaf | 75.838 |
| SRR9715739 | Root | 1.162 |
| SRR9715742 | Root | 3.684 |
| SRR9715743 | Root | 3.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.574 |
| SRR8749028 | MeJA induced 9h | 10.942 |
| SRR8749029 | MeJA induced 9h | 7.215 |
| SRR8749030 | Uninduced | 3.073 |
| SRR8749031 | Uninduced | 1.705 |
| SRR8749032 | Uninduced | 2.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.079 |
| SRR8400027 | Control - Root | 3.834 |