Gene detail

Gene detail information of Glyur000204s00012406.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62710.1	1.00E-166	Leucine-rich repeat protein kinase family protein
NR	XP_004508778.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like isoform X1 [Cicer arietinum]
COG	YP_001192956.1	4.00E-14	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|C0LGF4\|FEI1_ARATH	4.00E-96	LRR receptor-like serine/threonine-protein kinase FEI 1 (Precursor)
trEMBL	tr\|I1JZT1\|I1JZT1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G01420.1}

Sequence

Transcript Sequence

>Glyur000204s00012406.1
CTCCTCACTCTCTCTTCTACCCACTCGAAATCATCACTTCAACACTCACTCTCTCCGCGTGTAGCCATACCCACTGAGTGCTTTCATTCCCACCCACAGCACTTTCAAAGTTCAAAACCCTCATTTGTGAGACTGCAAAATGGAAATCAACACTGTAGCAGCGTGGGTTTTCATGGTGATTTTCACTACAGTTTTCTCCCCTTCTTCTCTTGCTCTCACCCAGGACGGTCTGGCATTGTTGGAAATCAAAAGCACTTTGAATGATACTAAGAATGTTCTCAGCAACTGGCAAGAGTCTGATGAGTCCCCTTGTGCATGGACTGGCATCTCATGTCATCCTGATGAACAAAGGGTTAGCTCAATAAATCTGCCATACATGCAGCTCGGAGGACTCATATCTCCCAGCATTGGTAAACTCAGTAGACTGCAGAGATTGGCACTTCATCAGAACGGCTTGCATGGAACTATTCCTAATGAAATTACCAATTGTACCGAGCTTAGAGCCCTGGATTTATCAAGCAATTCATTAAAAGGAGCTATACCTTCCTCTATTGGTCGTCTCTCACATTTGCAAGTTCTGAACTTGTCTACCAATTTCTTTTCTGGTGAAATCCCTGACATTGGAGTACTGAGCACCTTCCAGAAGAACTCGTTTATTGGCAATTTAGATCTCTGTGGGAGGCAAGTCCAAAAGCCATGTCGGACATCACTTGGTTTCCCTGTGGTGATACCACATGCTGAAATCCCTCCCAAAAGATCTTCACATTACATGAAAGGAGTGCTAATTGGGGCAATGGCAACTCTGGGCCTTGCACTCGTCGTAATCCTTTCATTCCTCTGGATTCGTTTGTTAACAAAGAAGGAAAGAGCTGCTAAGAAATACACAGAAGTCAAGAAGCAAGTTGATCCTGAAGCAAGCACGAAACTTATTACGTTCCACGGTGATATGCCATACACATCATCTGAGATCATAGAAAAGCTGGAGTCTCTTGATGAAGAGGATATAGTAGGGTCAGGAGGATTTGGTACTGTGTACCGAATGGTGATGAATGATTGTGGCACGTTTGCTGTTAAGCGAATTGACCGAAGTCGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTGGAGATCTTGGGGAGCATCAAGCACATAAATTTAGTAAACCTACGTGGTTACTGCAGGCTCCCTTCCTCAAGGCTCCTTATCTATGATTATTTGGCCTTAGGCAGCTTAGATGATCTCTTGCACGAGTATCTACAAAGTGGGAGAGCCACTGAGAAGTCAGATGTATATAGCTTTGGAGTCCTATTGCTGGAACTTGTAACCGGAAAGAGGCCTACAGATCCTGCCTTTGTAAAGAGAGGTTTAAATGTTGTTGGTTGGATGAACACATTACTGAGAGAGAACAGATTGGAAGACGTGGTGGACAGAAGATGCACCGATGCAGAAGCGGGAACTCTTGAGGTAATTCTGGAGCTAGCAGCAAGATGCACGGATGCAAACGCGGATGATCGNCCGTCGATGAACCAGGTGTTGCAGTTGCTGGAGCAAGAGGTTATGTCTCCTTGTCCAAGTGAGTTCTATGAGTCCCATTCGGATCACTGCTAAATGGTTCTCAAAAGTAAGCAAAAAGACTGGATGCTATTGCTAGTGCCACTGCACGTAGAAGTGGAAATGCATGGNTGTTGATGGGGGGAGGCTTCTAGCTTCCTAACTGTTTTGTCAGCGTGGCTTTGTAGAATATATTTTTGTAGCAAATGTGCAACAACCATTTGTGAATAGATTTTGTCATTTATCTACCTTCCGCTGCTGCTGGTTGTGGTTGTGGCCAAAACAAAACCAAAAAAAGAAGGGGGACAGACAACGTGGACACATGAGTGACAGTGGTGTTTTGGTATTTGGAATGACCTCCATTCTTGCTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	148448	152872	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012406.1	PF08263.7	LRRNT_2	28	65	5.70E-11
Glyur000204s00012406.1	PF13855.1	LRR_8	94	152	1.60E-07
Glyur000204s00012406.1	PF07714.12	Pkinase_Tyr	287	371	8.60E-11
Glyur000204s00012406.1	PF00069.20	Pkinase	373	467	1.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.113
SRR1783600	control	3.999
SRR1783602	moderate drought stress	2.453
SRR1811619	moderate drought stress	2.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.021
DRR006520	Root Summer glycyrrhizin high producing strain	7.519
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.700
DRR006524	Root Summer glycyrrhizin low producing strain	3.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.960

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.834
SRR2868004	Drought Stress (root)	6.871
SRR2967015	Control (root)	7.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.324
SRR9715740	Leaf	0.033
SRR9715741	Leaf	0.335
SRR9715739	Root	1.909
SRR9715742	Root	2.893
SRR9715743	Root	2.404

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.468
SRR8749028	MeJA induced 9h	8.782
SRR8749029	MeJA induced 9h	9.042
SRR8749030	Uninduced	0.870
SRR8749031	Uninduced	1.148
SRR8749032	Uninduced	0.692

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.383
SRR8400027	Control - Root	9.420