Gene detail

Gene detail information of Glyur000204s00012403

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28470.1	3.00E-141	Major facilitator superfamily protein
NR	XP_004508780.1	0	PREDICTED: probable peptide/nitrate transporter At5g28470-like [Cicer arietinum]
COG	YP_002494545.1	3.00E-22	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q3E8X3\|PTR52_ARATH	0	Protein NRT1/ PTR FAMILY 2.8
trEMBL	tr\|G7JPV0\|G7JPV0_MEDTR	0	Peptide/nitrate transporter {ECO:0000313\|EMBL:AES91179.1}

Sequence

Transcript Sequence

>Glyur000204s00012403.1
ATGGAGGAGAATGTGAACACTAATTCTCCTTCTTCTGCACTCGAGCTAGAACAACATGAGCAAACACGTGCACCACCCTCTCCTTCACCCACAGAACCTGGAGGGTGGAGATCCGTTAAATACATCATCGGGAACGAGTCGTTCGAGAAATTGGCATCCATGAGTTTGATATCAAATCTAACAGTGTACCTGCTCACGAATTACAACCTGAGTGGCATTTTCGTGGTTAATGTGGTGCAAATTTGGAACGGATCCTCCAACATTTCATCAATACTCGGTGCTTTCATTTCTGATACTTATCTTGGCAGGTTCCGGACCCTCCTCTTTGGCTCTATTGCATCACTTCTGGGTATATTGACCATAACACTAACAGCAGGTATACATCAGTTGAGACCCCTTACCTGCAAGGAGCGACCCCATTGCCAACAACCACACGGTTGGCAGCTGGGAGTCCTCTTTGCAGGTCTTGGACTGTTATCGCTCGGCGCCGGGGGCATTAGGCCCTGCAACATTGCTTTTGGTGCTGATCAGTTTGACACAAGGACAGAAAAGGGCAGGGGACAATTGGAGAGCTTCTTCAATTGGTGGTACTTCACTTTCACCATTGCACTTGTTGTGGCACTCACTGGTGTTGTCTACATTCAGACTAATATCAGCTGGACTTTGGGATTTGCCATTCCAACTCTTTGTCTTGCTTTCTCAATAACCATCTTCCTTCTTGGCCGCCACACTTACATATACAAGAAGCCTCAAGGCAGCATCTTTTCAGACATGGCCAAGGTGATTGCGGCAGCCTATAGAAAGCGCAAACTAGAGGTTTCTGGGAGAGCCTTCTATGATCCTGCTCCNACGTCGTGGGAACCGGAGTTGGACAATGTTAGGCTTGTTCAGACAGATAGGTTCAAGTTCCTTGATAAGGCTGCTATAATAATAGCTGACCCAAGTGAATTGGACAACCAAGGCATGGCAAGGAATGCTTGGAGGCTTTGCAGTTTGCAACAAGTGGAACACCTCAAGTGCTTGCTTGGAATTCTGCCAGTGTGGGTAACAGGAATCTGTATTTTCATTGTGATGGACCAGCAGAACACATTTGGGGTCCTTCAAGTTATACAAACCAATAGGTCCATTGGACCCCACTTCCAGGTTCCACCGGGGTGGATGAACCTGATATCCATGATAGCCCTTTCAATTTGGATATACATTTATGAGTGCATCTACATTCCTCTAATGAGGAGATTTGGCAAAAAGGCTACAAGGTTGACCATGGGGCAAAGAATCAGAATTGGGATTTTGATATCCATCCTATGCATGTTGGTTGCAGCAATCGTTGAGAAGAAGCGCCGCGACTTGGCATTAAGACATGGTTCGTTTACTTCACCCATGAGCTTTGGTTTGCTCTTGCCACAGTTTGCACTATCAGGTCTAAATGAAGCCTTTGCTGCTGTTGCTATAATGGAATTTTTTACCTTGCAAATGCCAGAGTATATAGCTACTCGGATATTCATGAACTTTGTTGGGAAAAGAGAAACCGACTTAGAGACAATGAAGAAAAATGAGAAGGAAAGTGTGGAAAACAATGAGAAAGTGATGATGGATGATGAACAACCAACTAAGATTAACTACAGAGGATGGAAGGTCATGCCCTTCATCATTGGAAATGAAACTTTTGAGAAGCTGGGAACCGTTGGCACCTTAGCCAACCTCTTAGTCTATCTCACAACTGGGTTGCTTGTTATACAGCTAACAGCATGGATTAAGAATATGCATCCACCTCACTGTGGAAGCGAGAGAAGCACATGCACAGAGCCAAATNCGGGGCAAATGGCATTTCTACTGGTTGGATTTGGGTTTCTGATAGTAGGGGCTGCAGGGATTCGACCTTGTAACTTGGCATTTGGAGCTGATCAGTTCAACCCCAACACTGATTCTGGCAAGAAGGGAATCAATAGCTTCTTCAATTGGTACTTCTTCACCTTCACTTTTGCTCAGATGGTGTCTCTATCACTAATCGTTTACATACAATCAANTGTGAGCTGGGCAATAGGTTTGGGAATCCCTGCTGCTTTGATGCTATTCTCATTCATAGTTTATTTCATGGGGAGCAAATACTATGTGAAANTTAAGGCAACAGGTAGTCCAGTAACAAGTATGGTTCAAGTTGTATATGTGGCTATAAAGAAAAGGAGATTGAATCTACCAGAGTATCCATTGGTTTCACTCTTTAGCTATACATCTCCCCAATCTATTAACTCCAAGCTTCCTCACACGCCTCAGTTCAGGTGGTAGCACTTGGAGCATGTGATCATGAACCCAATTGGAGAACGAATGACAAAGAGAGAGTCTGCGGAGAATGAAGAGGAAACTTTACTGAAGAACGAGAATAATGGAGCAGACGATGACCCTAGGATTAACTACAGAGGGTGGAAGGTCATGCCCTTCATTATAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	122519	146006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012403.1	PF00854.16	PTR2	104	504	1.20E-59
Glyur000204s00012403.1	PF00854.16	PTR2	604	733	6.80E-29
Glyur000204s00012403.2	PF00854.16	PTR2	116	508	5.70E-61
Glyur000204s00012403.3	PF00854.16	PTR2	112	289	7.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.482
SRR1783600	control	16.504
SRR1783602	moderate drought stress	17.817
SRR1811619	moderate drought stress	17.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.056
DRR006520	Root Summer glycyrrhizin high producing strain	3.398
DRR006521	Root Winter glycyrrhizin high producing strain	2.572
DRR006522	Root Winter glycyrrhizin high producing strain	2.510
DRR006523	Root Summer glycyrrhizin low producing strain	2.366
DRR006524	Root Summer glycyrrhizin low producing strain	2.312
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.304
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.000
SRR2868004	Drought Stress (root)	10.067
SRR2967015	Control (root)	16.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.683
SRR9715740	Leaf	7.357
SRR9715741	Leaf	10.978
SRR9715739	Root	1.667
SRR9715742	Root	19.196
SRR9715743	Root	14.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.446
SRR8749028	MeJA induced 9h	4.413
SRR8749029	MeJA induced 9h	3.103
SRR8749030	Uninduced	3.011
SRR8749031	Uninduced	1.859
SRR8749032	Uninduced	2.095

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.239
SRR8400027	Control - Root	39.477