Gene detail

Gene detail information of Glyur000204s00012391

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G18910.1	zinc ion binding;zinc ion binding
NR	XP_004508793.1	PREDICTED: uncharacterized protein LOC101497125 [Cicer arietinum]
trEMBL	tr\|I1MTQ0\|I1MTQ0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G10510.1}

Sequence

Transcript Sequence

>Glyur000204s00012391.1
ATGGACGACGGCGATCCTTCCCTGTCGGATGAGGAGAACGACGTGGAGGACTCGCCCGACANTCTGTCGCGAGTTCGACTCGTTGATGCTCCCATACTCCTGTTTGTTTGCTTCCATAAGGCTCTGCGCTCTGAACTCGACCGGCTCCGCGGCTTGGCGGAAACGGCGTCGTTGCAGGATGATCCACGCCGTCGCCGAGAAATAATCCTTAAGCTTCAACAAAGATTCCAGTTTCTGAAACTAGCTTTGAAGTATCACTGCGCTGCAGAAGACGAGGTTATCTTCCATGCACTGGATACGCATGTAAAAAATGTTGTATGTACATATTCCCTTGAACATAATAGCACCNATGGCCTTTTCGATTCTATCATTCACTCCTTGGATGAGCTCATGGGTNGTAATGAGAATATTTCCAAGCTGTTTCAAGAACTTGTGTACTGCATTGGCATCTTGCAGACCTCCGTCTACCAACATATGCAGAAAGAAGAAGAGCAGGTTTTCCCTCTGTTGATCCAGAAATTATCTACTAAAGAACAGGCCTCACTTGTNTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAGATAAACTAGCAGAAGTTTTGGTGTCTTGGCTTGGAAGCAACAAACAAACCTTCACTGAGACCTATTTTCAGAGTGAAGAACATCAAGGTGCTCATGGATTCCTACATATAGAAAGATCACTTGGGCNGAGTTCTTGCAATAGGAACTCCAAAGAAATTTCAGGTCAGATGAAAGTGAATGGCCAAGAAATAGAAGATGGGGTCAACCAGGTTAATGTTCTTCATCTTTGGCATAATGCCATCAGGAAAGATTTGAAAGAAATTCTGCAAGAACTTTATCCACTAAGACATTCCGGCTGTTTTCANAATCTAGACTCAATACTTATCCAACTAAAATTCTTGGCCGATGTCCTCATCTTCTACAGCAATGCTCTGAAGAAATTCTTTCGCACTGTATTGAATAAACTTGCTTATGACCAATTTTCCAAGTCTACTGAACAATTTCTTGGTGAAAGTCACCTTGAAGATATTCAACAGTTGCTATTCTATAACGCAGAAAGTGGAATGTCTTTGACAAAGTTTGTAGAAAAGCTTTGCAAAAAACTTGAATCATTTGTATCAGCAGTCAACAAACAATTTACTTTCCAAGAAATTGAGGTATTTCCTGTCATTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCCTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAAGAATCCAGATCCATTCTCTATTGCATAAAGGAAGGAAATAATTCTGTCAGTAAAGCTTTTGCACCACTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAATCTCAATTGAGACATTCCGACAGGACTTGCAGCATATGTTCAAAAGAAGATACTCTTTCTTACCTGAGCAAATGAAGGAAGNTTGTGGGTTTTCTTTCTTAAATTCTGACAAGCAGCCTCATAAAATCTCTGGCAAGAATTGTATGTTCTATTCCTCATCTTCTGGATCCAACAACGTGAACAAGTATGAGACACCATACTCCACAGGAATCAATCTGCATATATTTTTCCCTGACACTGTTATGAAGTTAAATCAGCACCCTAGATTTCGTGCAGCAAATCCTTCTTCTAGTTCATTTCTTGATGCTCCAAAACCAATTGACCTAATATTTTTCTTTCACAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCTTGGCTCCGCTCAGTTAGAAGAAAATGATGAGTTGCTTATAGATTTCCACAAACGATTNCATCTCATATGTTTTCTTCATCAAATCCATAGTGATGCCGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAACAGGTAAACTAAAAAACATTAGCCAAGCCTACACATTTGATCACAGACATGAAGTTGAGCACTTCAATAAAATGTCTCGCATCCTTGATAAGATGTCTGAATTACAGCTTTCAGTTTCTGCTATTGATTCGAAGATAAGGGACAAGAGAATGCTAAGGCATCATCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGTGAGGAGATAGAAATTTGGCCTATAATTAGAGAATTCTTTTCGAATCAGGAGCAAGGGAAGATCATAGGATGCATACTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGCTAATGACATCTTTAACTGAGGAAGAACAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAAGTGAATGGTGGCACGGGTACAGTTTAGCTAAGGTAACAGAGGGATCAAATGATGCCCCTCTGCAGACTGTTGAGCCACTAGAGATTATATCCAAATATTTATCTGAAGAAGTTCTTAATGAATTACAAGAAGAATCATCTGCCAACAGAAACATACTTTTTTTGCAGAAAGATCATATTGGTGATAATGTTGAGCTGTCTAACTACAATTTTGATGATAATGTTAAGGTTCATTATGCAGAACAAAATAATAATCACTGTTCAAAATGCACAGATCAATTTCATGATATTAAGAAACATTCCTGNGATGAAGTAATGGATATCACAAATCCGATATACCATGAAGGCCAGTCTTTTCAAGTTTGTGACAAGTCTCGGTATTATGACCGACTTCTGAAACTGAGTCAAGATGATCTGGAGATGGCAATAAGAAGGGTGTCTCGTGACTCCTGCTTAGATCCTCAGAAAAAGTCCCGTCGGATTATTAGACAGCAGATCTCTTCTACAGAAGTCAATATCAAAAGTGATGGACAGGAATTTCCNGGGAAGCATCCATCTTACAGGGACCCTCTCAAACAAATCCATGGNTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCTCCCTGTTGCAACCAACTTCATACTTGCATACACTGCCATGATGAGGAGGTATCAGATCATTCAATCGACAGAAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGATGATTCAACCAATCNATGCCACATGCTCAACAGTTTCTTGCCACAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGCAACCTGTGCCGAGTTGGAAAGGGTCTGGGTGTTGACTACTTTCACTGTATGAGTTGCAATGCCTGTATGTCTCGTTCTCTTATGATACATACATGCAGGGAGAAATCTTTAGAGGATAACTGTCCAATTTGTCACGAGTATATCTTCACATCTTGCTCTCCAGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAGGATGTTAGATGCATTATTGGCTGAGGAGAAAATTTCNGAAGAGCTTTCGGGTCAAACTCAGGTTATATTATGCAATGACTGTGAAAAGAAAGGAGCAGCCCCCTTCCATTGGCTTTACCATAAATGCCCTTACTGTGGTTCCTACAACACTAGAGTTATGTGA

Protein Sequence

>Glyur000204s00012391.1
MDDGDPSLSDEENDVEDSPDXLSRVRLVDAPILLFVCFHKALRSELDRLRGLAETASLQDDPRRRREIILKLQQRFQFLKLALKYHCAAEDEVIFHALDTHVKNVVCTYSLEHNSTXGLFDSIIHSLDELMGXNENISKLFQELVYCIGILQTSVYQHMQKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKLAEVLVSWLGSNKQTFTETYFQSEEHQGAHGFLHIERSLGXSSCNRNSKEISGQMKVNGQEIEDGVNQVNVLHLWHNAIRKDLKEILQELYPLRHSGCFXNLDSILIQLKFLADVLIFYSNALKKFFRTVLNKLAYDQFSKSTEQFLGESHLEDIQQLLFYNAESGMSLTKFVEKLCKKLESFVSAVNKQFTFQEIEVFPVIRKNCRNGMQVRLLSLSLHMMPLGLLKCVITWFSVHLSEKESRSILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKISIETFRQDLQHMFKRRYSFLPEQMKEXCGFSFLNSDKQPHKISGKNCMFYSSSSGSNNVNKYETPYSTGINLHIFFPDTVMKLNQHPRFRAANPSSSSFLDAPKPIDLIFFFHKAIKKDLDYLVLGSAQLEENDELLIDFHKRXHLICFLHQIHSDAEDEIVFPALEATGKLKNISQAYTFDHRHEVEHFNKMSRILDKMSELQLSVSAIDSKIRDKRMLRHHHLCRKLQEMCKSMHKLLSDHINREEIEIWPIIREFFSNQEQGKIIGCILGRIRAEILQDMIPWLMTSLTEEEQHVLMFLWSMATKNTMFDEWLSEWWHGYSLAKVTEGSNDAPLQTVEPLEIISKYLSEEVLNELQEESSANRNILFLQKDHIGDNVELSNYNFDDNVKVHYAEQNNNHCSKCTDQFHDIKKHSXDEVMDITNPIYHEGQSFQVCDKSRYYDRLLKLSQDDLEMAIRRVSRDSCLDPQKKSRRIIRQQISSTEVNIKSDGQEFPGKHPSYRDPLKQIHGCKHYKRNCKLFAPCCNQLHTCIHCHDEEVSDHSIDRKSITKMMCMKCLMIQPIXATCSTVSCHNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMSCNACMSRSLMIHTCREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKISEELSGQTQVILCNDCEKKGAAPFHWLYHKCPYCGSYNTRVM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00204	5749	14783	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000204s00012391.1	PF01814.18	Hemerythrin	39	170	3.60E-09
Glyur000204s00012391.1	PF05495.7	zf-CHY	1000	1078	4.80E-13
Glyur000204s00012391.1	PF14599.1	zinc_ribbon_6	1176	1234	4.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.393
SRR1783600	control	21.771
SRR1783602	moderate drought stress	21.287
SRR1811619	moderate drought stress	21.319

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.135
DRR006520	Root Summer glycyrrhizin high producing strain	21.798
DRR006521	Root Winter glycyrrhizin high producing strain	2.166
DRR006522	Root Winter glycyrrhizin high producing strain	2.168
DRR006523	Root Summer glycyrrhizin low producing strain	14.112
DRR006524	Root Summer glycyrrhizin low producing strain	14.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.255
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.471
SRR2868004	Drought Stress (root)	39.862
SRR2967015	Control (root)	21.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.859
SRR9715740	Leaf	1.804
SRR9715741	Leaf	2.005
SRR9715739	Root	1.756
SRR9715742	Root	8.495
SRR9715743	Root	6.946

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.743
SRR8749028	MeJA induced 9h	0.582
SRR8749029	MeJA induced 9h	0.327
SRR8749030	Uninduced	0.546
SRR8749031	Uninduced	0.370
SRR8749032	Uninduced	0.267

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.222
SRR8400027	Control - Root	56.092